RNA id: XM_036984061.1


Basic Information

Item Value
RNA id XM_036984061.1
length 4085
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110528482
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 74829699 ~ 74837226 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTCTACTGGAAAGAAAGAGCCGTGATTGGATCGCGCAGATACAGGAGGCGGGATCATTCCATCTTCTACTGTCAGATTGGTATAGAGTTGGCTTTGCTTCTGCAGctcTGGAAGAGGAGCAGATACGGGAGCTGTCGTCAGCCATGTCTGACAGCGACCCCTTTGAGGATGACGGTTTTCCCCTTGACCTGTCAGGGGGCGGCGTGGCCTCGGGTAAGCGGCGTCGCCGCGGCAACCTGCCCAAGGAGGCGGTGATTGTGCTGCGGACCTGGCTGTATGAGCACCGCTACAACGCCTACCCTTCAGAGCAGGAGAAACTCAGCCTGTCAGATCAGACCAGCCTCTCCGTGCTACAGATATGCAACTGGTTCATCAACGCCCGTCGCCGCCTCCTCCCTGACCTTCTCCGCAAGGACGGCAAAGACCCCACCCATTTCACCATCTCCAGGCGGGCAGGAAAAGGTGAGGGTCGCTCATCCACTGGTGGTGGAGGTAGCTCCCCTGAAAGCCCCACCTCCTCGGTCCCCTCACCAGCCCTGCCCCCACTCCGGCCCTCGGTCATCCGGCCAGCCCCCACGCTGGACCTCAGCCTCCTTGGCAACACAGCCACGGCCATTCTGACGGGAGCCGGCTACCCAGGCCAAGAGGGCTGCTGCGTCCAGGCCCTGATGCAGCTGGACATGCACGTTCTCCTGAGGGAGGTCGAGGAGAAGGGCTCTACGGTTATTAGCGCCAGTCCCATTGGCGGGCTATTCAACAcgccaccccccacccctccggAGCTGTGCCCCGGCCAGGACTTCAGTGACCTGAGGCTGCTGGTGGACGCAGCTCTCCAGAGGGCCGCTGAGCATGAGAGTCAGACGAAGGCCACTACAGAGGCCACGGTCTGCAGCAGTGCTATGGGTCTGACCCTTCCACCAGAGCCGAGCCAAGCTACGCTGAGTCCCACAGAAAAGGCTGTGGTGTCCGCAGTTTCAGTCCCAAGCCCCGGCACGGTCTCTTCAGCACCTAAACTCACCCCAGCCCTTTCCTTCATTCCTGCGCCAAGTCTGCCTCCTCGCCAGGCCAAAATTCCAGTCCTAGTGCCAGTTTCAACCTCTGTCCCAACATTCATCCCAGCACCAATCAAACCCCCTGTGTCAGCCCTAAGCCCTGTTCAAACCTTCACCCCATCACTAACTTTATCCCCTGTCCCAGTCTCATCCCCAACTTTAGCCCTAGTCCAAGCACCTCCGCCAGCCCTCACCCCATTCCTAGGCCTTTCTTCCTCCATCCCCAGCAGCAGCAGTTTCCAGAGGGCCCAGTCGGTGGCCAGTGTGTGGAGCATGGTCCACAGCGATGTTCCAGTTCGACAGCCTGGTCCCGTGGCACAGACTCCCATAGCCACAGTGTGGGGGGCGCAGCACACCCTGCATGCTGTCAGCGAGACAGTCAACTAGAGCCACGGCCCACACCCTGGTCTGTATATGGGGGCGCACCAAGCTGTGTATATCTGAGAACATATTCCTTTCATCAACCCACTGATCCTGTATGTCTCTGCTCTGCAGTTTGAATATGACAGAACTGTCATATACATCAGACACGGGGATGGAAATACAAGTGTTTTAAAGATGATGCTTttttaaagcattttttaaatcaggaCTTTAACAAAATATTTTATCCAATAGAGCCTGTTGCTGGGCAGAAGCTGTCTACTTGTCAACATTCCAGAGTATAGGTTAAATGTGACGTCAACATAAGAACGACAACACAACGTTCTATTATGTAGTTTTGAACTTACTATCTCAACCATTTCCAAACGAGGACATTTCCTTCCCctgttatacattttttttaatgtcttGAAGCCAGCACCAGCAGATCTAGCCTCATCAGTAGCAGTACCGGACTTGGTTGAATGTATAAAGCGGAACTCGATGACTTTAAACCCTGGCTGTCTAGCCTGTCAATCATTCCCACCAAGGGCGGACTTGGGGCGGAGACAACCGTGTTTGTTTCAAGCGCTAGTGTCGTGCTCCTCCAGTACAGTTTATGCACTTTAGATTTTCATTTTTTAGTCCGGCCTTCACAATCTCAAGCATTCCGAcgcccccttccccctcctcacAATGCCGGAAGACAGGCGGAAGGGAAATTGATTGTACTGCAGTTTGCCTGACTGCACAGCTCCAATGTCCTTCTCTCCTTGCCTTAAAGTGACTGTAAACATGTGGCCACCAGGGATTCTACATTGAAGACACACACCCAAAATCATCAGTCGCAAAGTATATGAACACTACCATTTTgttttacttaaaaaaatattaattttAACCCATTTCCAAAATAGTATCTCAACGGGTAAGCAgtatttgtgtgtatatatgaaaaaggaggaatgtttttttttgtattgctCTCTTATCTTTATGTATTGTGTATGATTTCCTGGGATGTTTTTAATGTGGATGTGAAGGAGGTgacatccctgtgtgtgtgtgtgaacgtaaGGTCATGTAACACAACTCAATTTCTGTGGTCGACGCTGAAGGCTTAGTCAGGTGACGCCGTCAGGCTAGTGCCCTAGTATGCCATAGTTGATGGATGAAGACTGTTACAAACATTTTCAAGCATTTGGGTCATCCTGTTTGGGGAGGGTTTGACCCAAGTAGCAAATCATTGGAGCCTTAAGATCTGGTCCTTGTATTTCAAACCaaaatgtcttaattgaaatACTCTTAGTTGTTCCCTCGGATGACAAAGGCTGGTCAGTGTTGTATTGAAGTCATTGATCAATGTTGAGGTTATTGAGAAGCAAACTGTCTGGAAAATGtgactctcctttcctctctgttaGTGGACTATATCCTCTCTACAGTGTTACTCATTCTTATACGGTTGTAGTTTCCATGAAACGGTCTTAGTTCATATACCACATTTTATGGCGAAATCCTAACTTTTGCTGCAGCACAAACATTAGTGCTGCTGCAAAGTCTTATATTCTGTCAGGTCAGTTCAAACAGGTCCAACTTTTCTCTATTCTTTTCAACTCTTAAGCTTTGAAAAGACCATTGTGttacaattccagaaaatgtttgATCTTCCAGCTAGAAAGAAGCATGATAAGAGCTGATATGGAATTTTGTTATTATTAGCCTGGGTTTGTGACGCGCACTGATCCCATTCTCTCCGTCATGTCTCCCAGATATGTAGGGTTAGGGCTACCCCTGGATTTCTTTCATACGGCTGGATGTCGGCATTGTTTCCTGATTTGTCGTTGGGAAAGGTAGATCGTACAGGTACTCCACTAACGGAGATGTGCTGAAGAGTTTTAAGGCTCACACATGCCGCACCCAATGTGGATCTAGCATTCTGCCTGTCATTCAGCACGCTGTCTTTTGGGGACCTGCTGTATATTGACTGCCAAAATTTTAATGTGTTTCTATGTGTAAAATCGGTGCGCACTCGGTTGGCAAATTATGTTCACAGGTGCTAAGTATTCTCGGCCAGCAAACACTTTTGGTGCGTCTGAGCCCGTAACTCCTCAAACAGTTTGAGGGAAGGAAGGGTTCCTGGTCATAGTGATTTGTAAGAAATAATGGTGTGAATAGATATACAGTACAATTAAGTGGGTACGTGGTTTATTCATTACTACATGCCACTGACTACACGTTACTTGTTGTGATACTGGAAACAACCTGGATACTGGACATTATttagaaagatatatatatatatatatatatatatatcaggtttTGGATGCAGAATGAAACTTGGGTCGTAGATGCCAATGTGAAAATGCATGTAAATTCATCAAGGTCAGGTGTTTCTCTTTTGGCATGAATTGTAGCTGAAATGACAATGTGTAGCTTCTCAATATGACCAATTGCATCCTAAAGATGTTTTTCCATTTCACTGTATGAATCATGGCTGATGTATTGAAAGTATAACTGGCTATCGTGCCTTAAACATGGGATTGAGGGATATACCCCTTCTACATAGAAACTTTTGAATAGTCTGTGCAATATATGCCTTAAACTTTAAATGTGTTTTGTACAAGCATTTCAGAGAATAAAAGTTTTTCTTTTTCATATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU735858 lncRNA downstream 2550 74825011 ~ 74827149 (-) True G647460
TU735908 lncRNA downstream 14672 74814765 ~ 74815027 (-) True G647500
TU735907 lncRNA downstream 14944 74814540 ~ 74814755 (-) True G647499
TU735897 lncRNA downstream 58232 74771144 ~ 74771467 (-) True G647489
TU735889 lncRNA downstream 89003 74740492 ~ 74740696 (-) True G647481
TU735865 lncRNA upstream 761 74837987 ~ 74840905 (-) False G647463
TU735866 lncRNA upstream 761 74837987 ~ 74839911 (-) True G647463
TU735942 lncRNA upstream 55729 74892955 ~ 74937768 (-) True G647534
TU735874 lncRNA upstream 65738 74902964 ~ 75055545 (-) True LOC110528483
TU735959 lncRNA upstream 83650 74920876 ~ 74923177 (-) True G647549
XM_036984457.1 mRNA downstream 16337 74788801 ~ 74813362 (-) True LOC110528480
XM_021610573.2 mRNA downstream 42322 74777397 ~ 74787377 (-) True trim107
XM_021610577.2 mRNA downstream 42517 74777397 ~ 74787182 (-) False trim107
XM_036984055.1 mRNA downstream 43036 74777397 ~ 74786663 (-) False trim107
XM_036984062.1 mRNA upstream 8250 74845476 ~ 75055731 (-) False LOC110528483
XM_036984063.1 mRNA upstream 8250 74845476 ~ 75055731 (-) False LOC110528483
XR_002474264.2 mRNA upstream 269787 75107013 ~ 75107924 (-) False LOC110528488
XM_021610591.2 mRNA upstream 439555 75276781 ~ 75314879 (-) True LOC110528489
XM_021608291.2 mRNA upstream 554478 75391704 ~ 75392659 (-) True LOC110527148
TU734363 other downstream 1018242 73810902 ~ 73811457 (-) True G646073
TU734207 other downstream 1134774 73694573 ~ 73694925 (-) True G645928
TU733633 other downstream 1619275 73207960 ~ 73210424 (-) True gnrh2
TU733350 other downstream 2111250 72717746 ~ 72718449 (-) True G645156
TU733319 other downstream 2125977 72700709 ~ 72703722 (-) True G645145
TU736097 other upstream 269671 75106897 ~ 75107916 (-) True LOC110528488
TU737600 other upstream 782099 75619325 ~ 75620937 (-) False G649025
TU737941 other upstream 1377475 76214701 ~ 76220931 (-) False G649327
TU737942 other upstream 1377475 76214701 ~ 76215513 (-) True G649327
TU738321 other upstream 2176202 77013428 ~ 77016601 (-) False G649684

Expression Profile