RNA id: XM_036984062.1


Basic Information

Item Value
RNA id XM_036984062.1
length 6684
RNA type mRNA
GC content 0.53
exon number 13
gene id LOC110528483
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 74845476 ~ 75055731 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGCCTGGCCTCACAGAGCCCCTGTCTCGGCAGTCTCCCTAATGCAAACGAATATGAACTGCTCAGTAATGGGGATCGCTGTGAACCTGGGCGCTTGCATTTCCTCTAAACGGAGAGAGACGGGCGAATAACAGACTCGACATCGGTAAAGTGTGCTATTTAAAAACTGGAGCACTGCGTTCGTTTATCATATTTGTGTTTATAACCGTTTTTATTTATTCTCAAAACGTTGCTGCCGGTCTTCAAAATATAGCCCGATTAGGAAGTTCTCGTCAATAAGAGCAGGATAATCGCAAATCAAGTCTAGTTCAATCTTTCTCCAGACCGATTGAATAGCCGATTTGAGGACTCCGAAGGATTTCTTTATCTATTGGCCACTACGTCCATGTCTTTGAAGACGGATTATCTAAACCATTCAACAAGGAAACTCCTTCCTATCGAGACCTTGGCTCCCCAAGAATGAGCTGTCAATGACTTATCCTCCAGGCCTGTCGTCTCTTCCCGGCTGGGGAGTCTTCTAGAAGGGGGCCCCTCTTGACCACCATGAAAGGGTTAGGAGCCAAACGCAACCGCCATCTGTCTGACTCCTGCGACCCCACCCAGGGCCCCCCGGAGCCCCTGTACTCACACCAGGCCTCCACCCTGCCTCGGAGCCCCTATCTCCTCAGCCCCACCAGCATGGACCACTACGGCACCATGGATCCCCGCCACTACAACCCCAGTATGGAAGCCCACCACAACCAGGGATCCCTGCCCCTGGACTACTCCCTCCCCCTCAACAACCAGCTGTCCAACAGCAGCACCTTCCCCCATGTCCACTACAACTCCCATTATGACCCCAGCGACTTCTCCCCGCCACAGGAGGACAGCATCGGCGGCATAAGTACAGGAACCCTGGGCACCTCCATGTCGATGGGGATGGGGATGCATGGAATGGGAGGCCTACAGAGCAGCCGGGGGGCCATGATCACCAGTGGTTCGGCTACTATCTCCGGCGGGGCCAAGATGAACCGGCAGTTGCAGCCCAACCTGTTGGACCAGTTGGAGAAGCAGCTGCCCGGGGGGCCTCGTGACGGCTTCAGCACACTGCAGTTCCACCGGAGCACATCGGCTGCCCTCTCCGTCGCCTCCAAGCAGCGCACCGACAGCCCCGGGCGCATCCGTAACCTGATGTGCTCCGTCCAGAAGCTCTTCGCCAAGTCACAGTCCATGGACGGTCACAACCTCAAGGGCGTCAACGGGCGTTCAGGGACAGGTAGCGGTAGCGGCGGGACCTCGTCCGGAACCGAGGACAGCGGGAAGCGGGACCGGCGAGCAAAGAGCAAAGACCGGGGCGGAGCCAAGTCAGATGGGGGCGGGACGGGCAAGCGGCGGCCGCGTTCCAACATGTCGGGCTACTGGAGCTCGGACGACCTGGACAACGCCGACCTCAGCAACTACCGCAACCCCATAGCCATGACGCTGGGACGCCCAACCACCCATGCCACCCAGCACACCACCCATGGTATTACCTACGATGCTCAGCAGGGGGCACTACagcagcagcagggacagcagaGCCGCTACGTGGTCCACAGTGGCTACAACACCATTAGTTCGTCTAAGAGCAGCAACGAAGTCATGAAGTACCAGCAGATGCTGGCAGGACccggaggtgggggaggagggggaggagggatcaGCATGGGAGTGAACACTAATGACTTTATAAAGGGAGGTTCGTGGTCGACGCTGACCCTGGGTCAGCCCAGGCAGGTGCTGCAGAAGGGCCACTCGGCTACCCTAGACCGGTCCATGCTCAAGTCCAAGTCGTGCCAGCAGGAGCTTGCCTGCCACTACCTGCAAGTGGGCCGACAGGGGGACTGGAGTAGCACGCTGGGCCGcagcggaggaggaggagccaATGAGATCCCATGTCGGCGCATGCGGAGCGGCAGCTACGTGAAGGCCATGGGTGACCTAGAGGACAGCGACGACTCGGACGGCAGCCCCAAGCCCTCGCCCAAAATGGCCGCCCGCCGTCAGAGTTACCTCAGGGCCACCCAGCAGTCTCTGAGCGACCAGCTACCGCCACGCAActgTCTTCCTTCACTGCGAGAGCTGTCTACCAATCGTAGCCTGGACAACCTGGACTGTCTGGGGGATCCGGTGAGGGGCTCCCTGTTCCCCCGCTGGGACGATGAGGACTTCAGCCAGGGAGGCGGCTGCAGCACCCTGGGGAGGAGCAGCTACATGGGCCAGcTGCAGGACCTGGAGATGATTAGCCAATGCTACGATGATAGCTGCTCTGAGTCGGCGTTCCGAGAAtcccacacactctcacactcccATTCCCAGGCGGTGGAGCCTCCGGATCTACCAATGCCCACGTGCTTCCGATCCCGTAGCCATAGCTACCTGCGGGCCATCCAGGCCGGATGCTCACAGGATGACGACACTGCTTCCGTGGACTCGGATTCACCGCCGCCCACCGCCACTACTGTTCACACCTATAGCACCAGCACTGtctccacATGCATCACCACCTGTAAGAAGCCTGCGCCACCGCCCGTGCCACCCCGCACCACTTCCAAGCCCTACATCTCTGTGACGGTGCAGAGCAGCACTGAGTCAGCCCAGGACACCTACCTGGACCACCAGTCTGAGCGTGATCGCCGCAGCAAGACCATTACCAGTCAGTCCAGCCAAGCCCACAGCAACTCCTCCGACAGCCTCGACAGCACGCGCGCCAACAGCTTGGCTCGGGGTATCCCTTGGCCCATCCCCGTCCCCATCGCCACCCCCCGGGAacccctcaccaccaccaccgtccaccacaccaccaccggGACTGACACCAACGACTCCCAGCGTGAACCCTTGAAGACGACGGGCACCAACAGGGGGAACCTGATGGCAGAGGAGCCCCTCGTGGACATCGTGCCCCGGAGGAAGCTTTCCTCCATAGGCATACAGGTTGACTGCATTCAGGAGGAAGTCCAACGAGTGGAGACACCGACACCACCATTGGCCAGATTCCAGTCAATCGGAATACAGGCGGACGACGGCTGGCAtCTCAGTCGCTCCAGTAACATGACTTCCAAGCAGgagacagactcagacacacaGGACCTCCCTGTCATCTCCCACGCCAAGCCCGCCCCCGAGAAGAAGAGCATGGTCAACAACGCCTGCCAATCCATGGACTCTCCCCCGAGCGGCGACCAGTTCAGCCAAGGCAACGGATCAAATCCCACCGCTGACACCAGTACGTCTCCACCTCCGCTACGGCAGTTCCTCAACCGCTCCACCACACGTTCCTCCTCCGACTCCTTCGCCGAGAGCCTGGATCCGGCCCTGGACCCCTCGTTCCTACCCCCTCCGGACCCCTGGCTGGAGAGTGGGAATGAGAATGGGGGCAGTGGGAACCCTAACGCGGTGCCCCCTCCAGGCCCTGCATGCCGGCGGGACGGCCATTGGTTCCTCAAGTTGCTGCAGGCAGAGACGGGCCGCATGGAGGGCTGGTGCCAGCAGATGGAGCAGGAGACCAAAGACAACCAGCTCTCAGAGGAGGTGTTGGGGAAAGTCCGCAGTGCAGTGGGCAGTGCTCAGCTCCTCATGACCAAGAAATTTGAGCAGTTCAGAGGACTGTGTGAACAAAACTTGAATGTGAACGCCAACCTGAAGACCACAGCCCAGGACCTGGCAGGCTTCTGGGACCTGCTGCAGCTCTCCATCGAGGACATCAGTCTCAAGTTTGATGAGCTCTACCACCTGAAGTCCAGCGACTGGCAGCCCCCTGCCGTGGCCCACTCGCCACCCGAGCGGAAGGAGGACCAGAAAGAGCCCCCTCCTCCAGTGCCAAAGAAGCCTGTTAAGGGGAGGCCGATGCTGGGACGTGAGAAGAGCGTCGACTCCGCCTCTTCCACCTCTTCAGCGGAGAAGCACCGGACGGAGGCCCGCAGGCGACTGCTGGCCGCTAAGAGGGCCGCCTCGGTTCGGCAGAACTCAGCCACGGAGAGTGCCGACAGTATTGAGATCTACGTCCCCGAGGCCCAAACACGtctctgagagaaagagagagcgagagagggggagagggagagggagataggaggAACTGCCTCTGAGATGGAGGGGAGGGTTGGGGTCTTCTCGCCATACACACACAGGGTAGGCTGGTCCTGGTGACAGCAAATCTAGAttaagtgagaaagagaggaaacAAGAAAATAAAAACTATTGGGCTGTAGACTATGGGGAACTCTCGTCTCCTCTCGCGAGGCTGCCATGGAAAAACCTCAACCGCAAACTTTGTTACTATTGTTAGTACTCTTGATTATTAAATCAATTATTAAATCAATTGAAAATTATACAAATGGTTATTGATGATGATATTATCTCCTAAAGAACCTATATCAAGACTGTTTTAGATGTACCTGTATCTTGGCTGTAACAGATCTAATAAGCGGACAGAGTAAGCATTTGTGCTTTCCGCCGCTCCTCCCTGACTCCCTCCCCCATGCCTTGGCCAACACGTAGTTTGCACAACGCCACCATGTGGTTTAATGTACACACTTACTcagaggagcacacacacacacacacacacatgcttcagACCCTCAGCTATCTATGTCTTCCTGgtgcttttttgtttgtttttatttgttttgtaaGAGCCCCTTGCCTGCATTCAAAGCAGTTCTAGATTCTTAAGAGGTTTTGGAGAGCAAGGAACCGAGAACTAAGGGTGGAAATAACAAGTATCACCACTTGTATAAGTGAGATCTATTGAAAGCACAATTGATGTTTACTTAGTtcattttttgtttaaaaaaaaaaaatgtttttttttattttttatttatttcacattttaGGTACTTTTTAACTGACTCAAAACACACTCACAAGTCAATATTTTCTGGAATGTAATTTGAATATCCTACTATTCCATTGAGATTATATTGTTTTCTGCCGTTTTAGGATGTATTCATCAGCCAATGTCCACAGTCCCATGACAATGGCCACGCTTTGTACTTTCATTTCTTTGTATTGCTCTGTGAATTTATTTctaggtcatattcattaggcagTTAATCAGTTTCAccttttgctacagtgtgccctaatgaataatATCATGGTGTGGGTATATCAGAGCAATTGAACATAATTCAGGTTTGAGTGAAGGACCAGGACCACCATTGAGAACAATCCCACTGTGCAAAGTCTGCATTGTTTCCTCGTTGTTTCAAGATCCTTTACCAGCGTAATGATGTTGCATCATTGTGGCTATTTCATTGAACATTTAAAAATCCAGTAGGTTTTTAAAGTATGTACTTCCAGCAACTCAAGCTGGGTTGCAGCAGCAGCAATATCACAGGAATTGAAAGGTTAGAGGGGTTTCTTTCCCCCAACTTCTGCCCCAGCGTCTCTCTCTGCAATGAaccttttgttgttttgttgtcacTGTATTTCAATGAGTAAATTAGTTGGCGGATGCAGGTGCGTTTCCCACATGGGACCCTCACTCAATATACATGGAAAACATGTGGTCCATTCCACCGTGAAATTCCAGTCACTCCAACCATGATTTGAATTGCCCTCCTATAgagaatttaaatggaattacGCCCAATTTTGACTTGTAGTTAAGCATTAATTAACTTTGACTAATGGCTGCACACTGTACTCGGCAATGGGAATTTGATATTGATACATTACACTGAATATTTGGTACTACTATAGGTATTTGCTACTgtatagggcggcaggtagccgagcggttaagagcatttggccagtaaccgaatggtcgctggtttgaatccccaagccgactaggtgaaaaaataTGTCTGTGCCCTTTAGCAAGGCACTTAAGCCTAATTACTCCTGTAAGtcgataagtgtctgctaaatgaataaaATCATGTAAGTGTAATATATTTTTCCACATCATGGATCTTGACCAGACACCCTCTTGAAAAGAGATGGCTAGAGAAAGGAAAGGAGACCAGGGAAGGGACTAGGAGAGGAAACCCTGTCTGACTATTGAGATGCTTCAGTGACACTGTGTGAAACCAGGAAGTTGTTATTTTATCTTCCTATTGGTCATATTTTGCACTACAAATTCATCCTGGAATGAAGAAGAAACGCATAGTTTTTTAAATTTGTTCAACCATATTGCTATCTACCATTGTTGTTTTTGTTAAATATCATCCCCAAATGCCTACACTTTTTTAAAATTGAGACAAATCATTAAATCTCTATTACATTACATAAATGTAATTTGTTTGCCATCCTTTGTTTTTGAAAATGCTGTTGTTGGTACAAAAAAAGAAATGCATTATCATTGTGCCTCTATGGGAAGTAAGTATAGTGATATCAAAACTGATTCACTATTTTAATAGGCCTGTGAAAGTGGAatgggggcctcccgagtggcgcagcggtctaatgcactgcattgtaggcatcactacagacctgggttcgataccaggctgtgtcacagctggctgtgaccgggagacccatgaggcggcgcacaattggcccagtgtcgcccaggttaagggagggtttggctggcttgGAATTCCATGTTCCATCGTGCTCTAGcggctccttgtggcgggccgggcgcctgcaagacCCCAGTCACCAgctgcacggtgtttcctcctacaaattgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU735865 lncRNA downstream 4571 74837987 ~ 74840905 (-) False G647463
TU735866 lncRNA downstream 5565 74837987 ~ 74839911 (-) True G647463
TU735858 lncRNA downstream 18327 74825011 ~ 74827149 (-) True G647460
TU735908 lncRNA downstream 30449 74814765 ~ 74815027 (-) True G647500
TU735907 lncRNA downstream 30721 74814540 ~ 74814755 (-) True G647499
TU736134 lncRNA upstream 84677 75140408 ~ 75140617 (-) True G647715
TU736142 lncRNA upstream 92279 75148010 ~ 75148480 (-) True G647721
TU736360 lncRNA upstream 102586 75158317 ~ 75158648 (-) True G647917
TU736361 lncRNA upstream 103586 75159317 ~ 75159516 (-) True G647918
TU736362 lncRNA upstream 104603 75160334 ~ 75160623 (-) True G647919
XM_036984061.1 mRNA downstream 8250 74829699 ~ 74837226 (-) True LOC110528482
XM_021610582.2 mRNA downstream 8337 74829699 ~ 74837139 (-) False LOC110528482
XM_036984060.1 mRNA downstream 8363 74829699 ~ 74837113 (-) False LOC110528482
XM_036984457.1 mRNA downstream 32114 74788801 ~ 74813362 (-) True LOC110528480
XM_021610573.2 mRNA downstream 58099 74777397 ~ 74787377 (-) True trim107
XR_002474264.2 mRNA upstream 51282 75107013 ~ 75107924 (-) False LOC110528488
XM_021610591.2 mRNA upstream 221050 75276781 ~ 75314879 (-) True LOC110528489
XM_021608291.2 mRNA upstream 335973 75391704 ~ 75392659 (-) True LOC110527148
XM_021610592.2 mRNA upstream 429578 75485309 ~ 75491381 (-) False LOC110528490
XM_021610593.2 mRNA upstream 429578 75485309 ~ 75491382 (-) True LOC110528490
TU734363 other downstream 1034019 73810902 ~ 73811457 (-) True G646073
TU734207 other downstream 1150551 73694573 ~ 73694925 (-) True G645928
TU733633 other downstream 1635052 73207960 ~ 73210424 (-) True gnrh2
TU733350 other downstream 2127027 72717746 ~ 72718449 (-) True G645156
TU733319 other downstream 2141754 72700709 ~ 72703722 (-) True G645145
TU736097 other upstream 51166 75106897 ~ 75107916 (-) True LOC110528488
TU737600 other upstream 563594 75619325 ~ 75620937 (-) False G649025
TU737941 other upstream 1158970 76214701 ~ 76220931 (-) False G649327
TU737942 other upstream 1158970 76214701 ~ 76215513 (-) True G649327
TU738321 other upstream 1957697 77013428 ~ 77016601 (-) False G649684

Expression Profile