RNA id: TU736097


Basic Information

Item Value
RNA id TU736097
length 794
RNA type TUCP
GC content 0.42
exon number 2
gene id LOC110528488
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 75106897 ~ 75107924 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCAGCATATTGTTACTGAAGCTGAACCAAACACTCAGACTCACTATCAATTCTCATCACCATGAAGATGATGTTGAccatctctctgctcctcagTGTTGGCTTTGCACTGGCTGATACAATGTCTGTTCCAGAATTGAGAAACGACCTGAACAGACCAGGTTGGAAGGTCATCAAGAACTGTGTGAAAGTGACAACGACCGTGGTAGAGGAGTTTGACAACATGCCGCCGCAGGAGAAGGAGACGGTTCAGATCTTCGGGGGACCAGAGTGTGAGAACAACAATGAGAGAAGCAAAAGAGGATTTGTTCGCATCGGCCGACAACTCTCCAATTACTGAAGCCTTGAGTAGTGTCACCTGGAGAAGACTGACCTGGCCTCCCCAGTTTACGTACGTGGCCCTTGACTGTGGGTATCCGGTGACAGTGGACGATCCAGTACAGTGACAGGCAGTGAAGACGACATGGGAATGTGGGATAATCATGAATTAGAAAGTTCAATTAAATTTATTGGATTCACTCCAACTACTGTCTGTCTGAAAAGTGACACACTATACCCTGTGTTTTGCAGATTTTGATGGTCATAATTAGTTTGCTTCTCTGTTATATACCATCTGGTAACTCTCTCTAACTGTGAAGTCTCTGAGGCCATACTGTAATGTATATGAACACAGTATTGAAAAGTAACCTTGAATAATCATAATGTATGTTAACGCTCACATTTTTAATGTTGCGTTGGATATGTATTTTATGGAATGCTTCTAATATGATCAAGATAAAAATAGACtcatcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU735874 lncRNA downstream 51352 74902964 ~ 75055545 (-) True LOC110528483
TU735942 lncRNA downstream 169129 74892955 ~ 74937768 (-) True G647534
TU735959 lncRNA downstream 183720 74920876 ~ 74923177 (-) True G647549
TU735865 lncRNA downstream 265992 74837987 ~ 74840905 (-) False G647463
TU735866 lncRNA downstream 266986 74837987 ~ 74839911 (-) True G647463
TU736134 lncRNA upstream 32492 75140408 ~ 75140617 (-) True G647715
TU736142 lncRNA upstream 40094 75148010 ~ 75148480 (-) True G647721
TU736360 lncRNA upstream 50401 75158317 ~ 75158648 (-) True G647917
TU736361 lncRNA upstream 51401 75159317 ~ 75159516 (-) True G647918
TU736362 lncRNA upstream 52418 75160334 ~ 75160623 (-) True G647919
XM_036984062.1 mRNA downstream 51166 74845476 ~ 75055731 (-) False LOC110528483
XM_036984063.1 mRNA downstream 51166 74845476 ~ 75055731 (-) False LOC110528483
XM_036984061.1 mRNA downstream 269671 74829699 ~ 74837226 (-) True LOC110528482
XM_021610582.2 mRNA downstream 269758 74829699 ~ 74837139 (-) False LOC110528482
XM_036984060.1 mRNA downstream 269784 74829699 ~ 74837113 (-) False LOC110528482
XM_021610591.2 mRNA upstream 168865 75276781 ~ 75314879 (-) True LOC110528489
XM_021608291.2 mRNA upstream 283788 75391704 ~ 75392659 (-) True LOC110527148
XM_021610592.2 mRNA upstream 377393 75485309 ~ 75491381 (-) False LOC110528490
XM_021610593.2 mRNA upstream 377393 75485309 ~ 75491382 (-) True LOC110528490
XM_036984066.1 mRNA upstream 422461 75530377 ~ 75542507 (-) False LOC110528491
TU734363 other downstream 1295440 73810902 ~ 73811457 (-) True G646073
TU734207 other downstream 1411972 73694573 ~ 73694925 (-) True G645928
TU733633 other downstream 1896473 73207960 ~ 73210424 (-) True gnrh2
TU733350 other downstream 2388448 72717746 ~ 72718449 (-) True G645156
TU733319 other downstream 2403175 72700709 ~ 72703722 (-) True G645145
TU737600 other upstream 511409 75619325 ~ 75620937 (-) False G649025
TU737941 other upstream 1106785 76214701 ~ 76220931 (-) False G649327
TU737942 other upstream 1106785 76214701 ~ 76215513 (-) True G649327
TU738321 other upstream 1905512 77013428 ~ 77016601 (-) False G649684
TU738738 other upstream 2274751 77382667 ~ 77382936 (-) True LOC110529034

Expression Profile