RNA id: XM_036984068.1


Basic Information

Item Value
RNA id XM_036984068.1
length 1460
RNA type mRNA
GC content 0.55
exon number 8
gene id LOC110528491
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 75530377 ~ 75542507 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTGATCTCCATCTACAGAGAGTCTCTCAGTCTCCACAGACCACCTCCTCTAACACTGGCTAAAACGTAAGTTgtcatgtccaccagagctgtgaaGAGCTACTCTGTGAGGCCCTCCTCTGCAGGCATGGGCTCCCCTCAGAACTTCAGCAGCAGCTCCTACTCCGGTGGATATGGCGGTGCCAGACAGAGCTACAGCGTCCGCAGCTCCTACGGGGGCGTTGGCAGCAGCGCCAGGGGcgttgcagcaggtggttataGGGTAATTGTGGCTGGGGGGTCCGTGCAAAGACGGGGTGTGATGGAGTTTGGGTATACGGTCATGGGTGTTGGCGGTGGTATGGGTGTTGGCGGCGGTATGGGTATGGGGGGTGGTATGGGGGGTGGGACGATGAACTGTACTGGACCCCCTCAAATCACAGCTGTTCAGGTCAACCAGAGCCTGCTGGCACCACTGAACCTGGCGATCGACCCCAACATCCAGGTTGTCCGCACCCATGAGAAGGAGCAGATCAAGACCCTCAACAACCGCTTTGCCTCCTTCATCGATAAGGTGCGTTTCTTGGAGCAGCAGAACAAGATGCTGGAGACCAAGTGGAGCCTCCTGCAGGACCAGACCACCACCTGCTCCAACATCGACGCCGTGTTCGAGGCCTACATCTCCAACCTGCGCAGACAGCTGGACGACCTGGGCAACGAGAAGATGAGGTTGGAGTCGGACCTGCACAACATGAAGGGTCTGGTGGAGAACTTCAAAACCAAGTATGAGGATGAGATCAACAAGCGTAACGAGTCTGAAAACAATTTTGTTCTCCTGAAGAAGGATACAGATTCTGCATACATGATCAAGATGGAGCTGGAGGCCAAGCTGGACTGTCTCACTGATGAGATTGAGTTCCTCAGGAGTATCTATGATATGGAGCTGCGTGAGCTGCAGGGCCAGATCAAGGACACCTCTGTGGTGGTAGAGATGGACAACAGCCGTAACCTGGACATGGACTCCATTGTCGCTGAAGTGCGCGCCCAGTACGAGGACATCGCCAACCGCAGCAGAGCTGAGGCCGAGACTTGGTACACACAGAAGTATGAACAGATGCAGGTGTCAGCCAGGAAGTATGGGGACGACCTGAAAAACACCAAGGCAGAGATCGCAGATATGAACCGTAAAATCATGAGATATCAGTCTGAAATTGACATGATGAAGGGTCAGCGCAACCACCTGGAGAACCAGATTCCTAAGGCAGAGGAACGCGGTGAGCTGGCGGTGAAGGACGCCAGGCTTCGCATCAACGATCTCAAGGTGGCCCTGCAGAGAGCCAAACAGGACATGACCATGCAAGTCCGCCAGTACCAGGAGCTGATGAATGTCAAGCTGGCCCTGGACATTGAGATCGCCACCTACAGGAAGctgctggagggagaggagagcagAAGGAATGAATAGAAGGgacatccccat

Function

GO:

id name namespace
GO:0045095 keratin filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU737553 lncRNA downstream 51456 75483934 ~ 75484191 (-) True G648983
TU736587 lncRNA downstream 70878 75464450 ~ 75464769 (-) True G648114
TU736570 lncRNA downstream 80976 75454439 ~ 75454671 (-) True G648097
TU736546 lncRNA downstream 112766 75422046 ~ 75422881 (-) True G648074
TU736547 lncRNA downstream 114205 75419167 ~ 75421442 (-) True G648075
TU737612 lncRNA upstream 50138 75592643 ~ 75593171 (-) True G649036
TU737617 lncRNA upstream 58405 75600910 ~ 75601170 (-) True G649041
TU737599 lncRNA upstream 78035 75620540 ~ 75623983 (-) True G649025
TU737602 lncRNA upstream 82994 75625499 ~ 75629826 (-) True G649027
TU737632 lncRNA upstream 99405 75641910 ~ 75642242 (-) True G649056
XM_021610593.2 mRNA downstream 44265 75485309 ~ 75491382 (-) True LOC110528490
XM_021610592.2 mRNA downstream 44266 75485309 ~ 75491381 (-) False LOC110528490
XM_021608291.2 mRNA downstream 142988 75391704 ~ 75392659 (-) True LOC110527148
XM_021610591.2 mRNA downstream 220768 75276781 ~ 75314879 (-) True LOC110528489
XR_002474264.2 mRNA downstream 427723 75107013 ~ 75107924 (-) False LOC110528488
trnaq-uug-2 mRNA upstream 164669 75707174 ~ 75707245 (-) True trnaq-uug-2
XM_021610603.2 mRNA upstream 504543 76047048 ~ 76060389 (-) True LOC110528500
XM_021610604.2 mRNA upstream 526570 76069075 ~ 76085739 (-) False LOC110528501
XM_021610605.2 mRNA upstream 554658 76097163 ~ 76167318 (-) True LOC110528502
XM_021610606.2 mRNA upstream 636048 76178553 ~ 76191798 (-) False LOC110528503
TU736097 other downstream 427731 75106897 ~ 75107916 (-) True LOC110528488
TU734363 other downstream 1724190 73810902 ~ 73811457 (-) True G646073
TU734207 other downstream 1840722 73694573 ~ 73694925 (-) True G645928
TU733633 other downstream 2325223 73207960 ~ 73210424 (-) True gnrh2
TU733350 other downstream 2817198 72717746 ~ 72718449 (-) True G645156
TU737600 other upstream 76820 75619325 ~ 75620937 (-) False G649025
TU737941 other upstream 672196 76214701 ~ 76220931 (-) False G649327
TU737942 other upstream 672196 76214701 ~ 76215513 (-) True G649327
TU738321 other upstream 1470923 77013428 ~ 77016601 (-) False G649684
TU738738 other upstream 1840162 77382667 ~ 77382936 (-) True LOC110529034

Expression Profile