RNA id: XM_021610606.2


Basic Information

Item Value
RNA id XM_021610606.2
length 3203
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110528503
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 76178553 ~ 76192151 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTTTTTAGCTAATTTACCATGATGTCACCAGTGCTGCCTTCAGACGTTTTTACGTTATGGAATATTCAATTGGATGGAAACAGTGGTGTCCTGAACGTCCAGTTTAAAAACGGGGAGGGGTTGGGTTGTGGGTTAGAGAAGGATGTCAGCATGGCCTCTTCTCTTTTAAAACGTCACTCATTGCTTCAAACCACACCCATCAAACGGGAGGAAACATACCTCAAAGTCTGTTCAAGAACGTTTTGGGGGGTGGAAACGTGTCGTTCAGTACCAACCATTCAAGCGAACTGAACCCACCTCTAGATATAGAACAGGAATAGAACAACAAATTAACGTTTCGTATTTTTCAGGTGATTAATATATTCATCCTGCGAGCTACCTGTGTTTGGTTGCGCAAAAGTATTGCGTTTACTTGCTGATGACGGGATAAGCATGGTGTGAATCACGGAGTAACTCAACAAAGATATAAGCACAAGAGCAGCGGCTTAACAAGAGGAATCATACACATACCGGAGTGAGAAGACACGATGGCAGAGAACAAGATGGGGCCAAACattggggctggggctggaggtTTTGCCAAACTGGTACAAAAGTCATTGAATCGAGCTCAGGAGAAGGTCATGCAGAAGCTGGGTAAGAACATGGAGACAAAAGATGAACAGTTTGAGCAGTACTCCCAGAACCTTCTCAAACAACAGAATGATGGCGGCAGGCTATTTAAAGACGTCAAAGCATACTTCAGTGCAGTGAAAGTGATGCATGAGACTTCCAAGCGCCTGTCCCAGACGTTAAGAGATGTCTACGAACCTGACTGGCAGGGAGGAGAGGACCTATCTGTCATCATGGAGAGTGAGGACTTGCTGTGGAATGATTATGAAGAGAAACTAACAGACCAGATAGTTCGCACCATGGAGAATTACACTGGACAGTTTCATGAAGTCAAGGAACGAGTAGCCAAACGTGGTCGGAAGCTCGTAGACTACGATTCCTCACGCCACCACTTGGAGACGCTGCAGAATGCCAAGAAGAAAGACGATGCCAAAATCACCAAGGCAGAGGAGGAGTTCAACAAAGCCCAGAGTGTGTTTGAGGAAATCAACAAAGAGATGAGGGAGGAGCTTCCTGTTCTCTATCAAAGCCGGATTGGATGTTACGTGACCGTCTTTCAAAACATTTCCAACCTGAGGGACGTCTTCTATAAGGAAATGAGTGTGCTGAACCATGAGCTTTACAGCGTGATGAAGAAGCTGGAGACTCAGTATTCAGGAAAAGCTTTTATCATCAAGGGCCTTAACAGCACCAAGTCCAagaagagaaaatccctggtcatctcaGCGCCCATCCCCTGTAACACAGCCTTCCCCTCGGAACACACAGCTCTCCACGCATCCACAGCCCCGGAGAACGGCAAGGAGACCTGTACCCAGAGTATCCCTGAGGAGCCCGCTGCCATCTCAGGAGAGGCTGACGAGGGCACTGGCACAGCGGACCCCTGCGTCTTCACCTCCGTTCTCTCGGACGAGTTGAGCTCCAACGGCACCACTACACCCAACAGGCGGTCGGCGTGCGACAGCGACAACGGGGTCGGGAGTGACGTCGCTTCAGAGGGTCTGAGTGACCTCCAAGATGGCGGTGCTTTGGAAGAGCAGGGCCTTAGCCAATTGCAGGACTCCTCTGCCTTAGAAGAGCAGGTTCAAAGGTCAGAGGTGACCTCTGGAGGTGAGGTCATTACCAGTCAGAAGGCTGTGGCTGAGTCCACAGAGAGCAAAGTCCTATATGACACTGACCAGGCTAATCTTCCAGAGCATGGCAAAGCCAAGGCTCCACCGCGTCCTGCGCCACAACTTTCCTTACCCCACTCTGAGAAGCACTCCTTCCCCCCTGCAGAGGCCAGCCAAGTGGAGGTGGTggaagagaagggagaaagagcTTCCCAGGAGCTGCAGGCAGGTGACACCGAGAGCACTGGAAATGACTCGGACTCCCAGAATCCACCTGGTTTCATTTACAAGGGAGTGGCGCTCGAGGGTCACATTTCAGAAGACGGCACACTGCAGTATGACGTGGAAGATCTGATTCTTATCCTCGCCGACGCAgaggagaagCAGGAAGGCATGGCCAAGGTGGTGAGGGAGAAGACATGTATTGAGCAGGGAGATCTGCCAGAATGAGCCAATTTGTACCTGTCATTCCTGTCTTCCCCTCGAGCTGTGGTGACCCATTCAGTGTTCATGTGCTAGTCAGAACATTTccaacttgctaactggttgtcgTTATACACGTGCCGCGCTCAACCAGTGACCAAGTTGGAGTTCCGATTAGCACACCGGCACACACAATGGCAATGGACGGAGATGGTATGGGTGTGGAGGACTTCGtaagaagagaaagaggaaaaacAGGAACACAAGCCCTATTAATCACACGCTTCCATGTCTCAACTTGTTGGAAGAAAACGATGTGTCATACTTACCGAGAGAATGTTCTTTTGTTAACACATGTTTTTGATATGCAGTATTTTGGCCTTGTTTGTGTTAACATTGTGTAAGTCTCAACTGTGAAACGTATagaaaccatttttttttatattgatgCCATTGAAAGAGTTGTAGTTTAATAAAGTTATGTGAGAGAGGAGTGGTGTTGTTGAAATAGCAAAAAGAATAGCATTTTCACTGTTCTAATAGGTTGCATGGGTCTGCTTTAGCTTTACtgcttaagcaataaggcccgaggaggtgtggtatatggacaatataccacggctaagggctgtccgGATGCACggcgcaacgcagagtgcctggccACAGCCCTGaggtgtggtatattggccaaatatATGACAAACCgcctgaggtgccttattactattataaactggttaccaacgtaattcgAGCAGTAAGAATATTTTCTGTCATACCCGTTGTATACGGTCTGCTATACCACTGCTGAAAGCCAATGaacattcagggcttgaaccacccagtttctaATATTCCATATTCCCATGAGTAGTCAAGCCCCTGTGTatcacatgttacaacacaaGGTGGCGCTAGTGGTCTAACAAACTACAGAGATAACCCATTTTCACTTGAGGTGCTTTCccattctttttttgttgttgcagtgaTTGTGAATATTAGTGTCAACTTCGTGGCCGACCTTGAAACTTGGTGGGATAACCTCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU737933 lncRNA downstream 840 76177362 ~ 76177713 (-) True G649320
TU737931 lncRNA downstream 2372 76175962 ~ 76176181 (-) True G649318
TU737904 lncRNA downstream 50612 76126640 ~ 76127941 (-) True G649292
TU737820 lncRNA downstream 108270 76069079 ~ 76070283 (-) False LOC110528501
TU737821 lncRNA downstream 108270 76069079 ~ 76070283 (-) True LOC110528501
TU737939 lncRNA upstream 17107 76208905 ~ 76225014 (-) False G649325
TU737938 lncRNA upstream 31834 76223632 ~ 76225014 (-) True G649325
TU737952 lncRNA upstream 35947 76227745 ~ 76228052 (-) True G649337
TU738015 lncRNA upstream 138216 76330014 ~ 76330342 (-) True G649399
TU738016 lncRNA upstream 138997 76330795 ~ 76331027 (-) True G649400
XM_021610605.2 mRNA downstream 11235 76097163 ~ 76167318 (-) True LOC110528502
XM_021610604.2 mRNA downstream 92814 76069075 ~ 76085739 (-) False LOC110528501
XM_021610603.2 mRNA downstream 118164 76047048 ~ 76060389 (-) True LOC110528500
trnaq-uug-2 mRNA downstream 471308 75707174 ~ 75707245 (-) True trnaq-uug-2
XM_036984067.1 mRNA downstream 636046 75530377 ~ 75542507 (-) False LOC110528491
XM_036984086.1 mRNA upstream 75852 76267650 ~ 76279500 (-) True LOC110528506
XM_036984088.1 mRNA upstream 91451 76283249 ~ 76328054 (-) False LOC110528507
XM_036984087.1 mRNA upstream 91451 76283249 ~ 76328059 (-) True LOC110528507
XR_005052730.1 mRNA upstream 95336 76287134 ~ 76287188 (-) True LOC118965404
XM_021610615.2 mRNA upstream 222482 76414280 ~ 76428175 (-) False LOC110528509
TU737600 other downstream 557616 75619325 ~ 75620937 (-) False G649025
TU736097 other downstream 1070637 75106897 ~ 75107916 (-) True LOC110528488
TU734363 other downstream 2367096 73810902 ~ 73811457 (-) True G646073
TU734207 other downstream 2483628 73694573 ~ 73694925 (-) True G645928
TU733633 other downstream 2968129 73207960 ~ 73210424 (-) True gnrh2
TU737941 other upstream 22903 76214701 ~ 76220931 (-) False G649327
TU737942 other upstream 22903 76214701 ~ 76215513 (-) True G649327
TU738321 other upstream 821630 77013428 ~ 77016601 (-) False G649684
TU738738 other upstream 1190869 77382667 ~ 77382936 (-) True LOC110529034
TU739558 other upstream 1837446 78029244 ~ 78029753 (-) True G650755

Expression Profile