RNA id: XM_021610615.2


Basic Information

Item Value
RNA id XM_021610615.2
length 4311
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110528509
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 76414280 ~ 76428175 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacaccagCAGTCATGTGACGGTAATATAGTACAACTACTCTGCCTCGCTGCTAATCAGTCTGAACGGTTCTGGTAGGCAAGTCTCAAGGACAAACCATGCATTCGAGATAGAGATTCCCCATCAAATGCAAAGGAAAGACAATGCATTGGGATAAAATAAGGGATTTGTAAATGCTTTATTGAAAAAGATATATCCTGGCTGGAAACCTTGGAATTAAAGTATTTTCCTACCGAAGCATTCTTATTTTTTATCCTGAGAGAGAACAACAGGTGTTTCTCTATTTTTTTTCTGCGAAGCGTGACCTTGCTGTGGTGACCCCTTCTGGGGTTTATTTGTTGACAGTTTCCCGACAACAAGAGGAATAACCCTAACAAACTGTTATATCAGTAAGACAATTTTCAACACAAATTGGAGTGACAATCTCTTGGCCCATAGCCAGGAATGGTGGATAACTTCCTATTGAGCGGCGAGGAGACTTTCGTAACTTACGATAGCGCCCCTTCGGTGTATCACCTGTCGGACATGGTGACGGATGCAGGGACCTACCAGGTGATGCCCTCGCCCTTCTCCGAGGATGACCTGAGCGAGTCATCAAGCCCTCGCTCCTGTTCTAGCCCCGACTCCCAAGTGCTCAGCTCCAGCTATGGCAGCAGCTCCAGCGCCGAGAGTTCAGACAGCATCCTGGACTTCCTGCTGTCCCAGACCTCCCTAGGCGGAGCAGGGACTGCGGCGGCCATCCCCATGTCACTGCCCACCTCTCTGTGGGACTCACAGAGGGATGAGCCATCCCACCCCCATCCAGAGGCCTTGAAGGAGGAGAGTGTGGACTTCTCTGTCTGGTCCTTGGTGGACATGGAGCAGCCATCCTTCCAGCCCACattggaggagatagaggagttcTTGGAGGAGAACATGGAGGTGGTGTCATCCATGAAGCAGGAGGCCCGGGAGGGGGCGCTGGGGCTGGGTCTGGAGGAGATCATGGGGCTGGGGGTGGGACTGGAGGTGTACAGGGAGTCCTCATCCCCAGGGTCAAGGCTGGAGCCCGAGGCCAAGCATTCAGACCAAACTGTGTTTACCGagaatgctgccaccaccaccgaGACCAAAATCACACCGGCCTCGCCGGCACAGGAGTCCATAGAAGGTCTGCACGAAGACAGGTCCAAGAGTGATTCATTATCCAGCAGGCTTGGGACAACAGAGAGCTTTGCAAACCGTGGCAGCAGTGGGATGCCGGTCATCCTGCAGATCCAGCCCATGCAGATCAAAAATGAACCCAGTTCCTCGGCTCCTCATCATCCTCCCCAAGTCGTCCAGCCTCCCCCTCAGCCGGCATCCGACATCAAAATTGCCCAGCTGCTGGTCAACATCCAGGGGCAGACCTTCGCCCTGGTTCCCCAGCTGCTGCCCTCCACCAGCCTTAATGTCTCCTCCAAGTTTGTGCGCATCGCTCCAGTGCCCATTGCAGCCAAGCCCCTGGGCCTTGGGGAGGTGCTGGTTGGGGTCCAGGGCCAAGGGCTCCATGTGGGGGGTCAGCAGTTTCAGAAGAACCCTGTGGCGGACCTCATCAAAATGCACAAATGCACTTTCCCCAGCTGTACCAAGATGTACACCAAGAGCAGCCACCTGAAAGCCCACCTCCGGcgacacacaggggagaagccctTCGCCTGCACCTGGCCAGGCTGTGGATGGAGGTTCTCGAGGTCAGATGAGCTGTCGCGACACCGGCGGTCCCACTCAGGGATCAAGCCCTAccagtgtccagtgtgtgagaAGAAATTTGCCCGCAGTGACCATCTGTCAAAACACATCAAAGTCCACCGCTTTCCGCGAAGCCGGACACTGCGCACAACAAACTGACCACACCCGGACCACTCTTCAATGGACACAGACCAAAGGAGCAcggaatgtgtgtctgtgagatggAATTTGTGTGAATGTGCTTGTGTGAGAGTGTGGTATGACttacgggggggagagagagaaaaagagccagagagagagagcaagagagaaaaagagagagagagagaaaaagagcgagagagaaagagctagagagagaggggtcgagagagcgCGAGCACGAGAGAGCGATGGAGATGGAAGATTTATGTGTGCCTTGCCTTTTAGAGAGATCTATAACAGTGGTCTTGTGCTATAATTTATTGTTGAAAGCAAAAGCAAAACCAACACATGACACTTACCATCTTCTTAGTAATCAACGTTTCTTGAGATTCTTATTGCTGTTGGTATTTTGTACactttttatttgtttttctgttcagtctttattttatttttcaattaAAGATTGTTTTCATTTGAGATGAAATGTATTAATTGCTTCAGTAATAGCCTTGAGTTTCTATTTTACCTGGATATGACTGCCTTTTACCTTGTTAAGAAGTGCCAATGTCTTTGACATTCCTCATCCAAGTCCGGTTGAAGTTCGCCCGGAAAAGTTCTCCTTGTTTTTTGCCTTGTCACTCATAGCTCATTGACAGAGGGTAAAGAATAGCTTACTCATTCATCACACTGTTTGTTCAAAGGGAGTGGCAGAGCATATTGTCAATTCTGTACATAAACTACTGATAACAAATATGAACATGTCGCTCGCTATAAGCTACTGGGACTCTTCTCAAGTTCCAGAAAAACTTCCCCAGCTCAGATTCTGAGACAAGGCGGatgaaagtaaaagaatggaacaAAGAAAGAATTGCGCACATTTATGATTGTTGATTGTTTTATGTGTAAAAAAAAGCCTTCCAATCAGTGTTAGATTTTGTATTCAGCTTTTTATTCTAAACTCATGTTGTGTATTTGTTGGTCTTTTTCGTGTCAGTGGCTCAAGCCGTTCGTAAGACACTTGTCTGGCCTTAACCCGCCACAGCATCCTTACTAGGGGGGCAAAATGGTCTGAATAACAAGTGATTCATTGCAGGCATGTTTTATGGATTAATGGTGGCATGGTTTGAGAGAATGAGGAAAGGGAATTGGAAATGCATAATCCTTTAATCCTGTCAATGGAATTGAATCTCAATGAGCTTTTTCTCTCCTTTTTGCTGTTGACACAAAATCTGCCTCAAATCAGCTCCACAATCTGATCTGTTACTGGAATACCCCAGAAGCTTATGTTGAAGTGAGGTTATCATGTATGTGGATACCACTACACCACGGTGCTGAACAACCAGAATAACTACCTTCTGGAAACTGTTGTCATAACACACTTATTAGGCCATGGCACAGTTGTCATTATTCTTGATGTCCTGTTTGCTCTTGAGACTTGTTGGTTAAGTACGCCACGCCCTGTTGTGAAAGTACGGTGTGTGAGACACCATTCATGCATAGTTAATGTGATGTTCGCAGATGAAAAAGCAGGGGTACATTATATTGTACATAATTCCTTTCATTCAATTTTTGAATTTTTAATGCTTGTTTAAACACAGGTGTTTTATCGCATCCTATGAATGCATGTGAATATGCAGGAGTGTACATGGCTACACAGAAGACTATTGTAATAACATATCTTAAGGCCAAGATTCAggactctattcaatctgtaaagCTGAAGCGTCATTTCTgattgagctgacatatgcagtgtttaccgtgaATCCAGTCTCCGCTAAACAGGAACCTTGCCTTTAAATTAAATCACTCTGTAAAGCTGAACTTCTGCGATggggattgaatagagccctcaatcagatcaagcgttaaTCGGCGATAGCCGACACCtgcatagctgatgttttggcgTTGTCTGAACTGCGTTGGAGCGCTCAAATCgttgagcagctgctcttgttaTCTTTTTCATGAAGCCACACCCATCCCACTTGCAttagaagttcagaacgagaaagtctaggctatatagaaataatgatgCTCATTGAAAATCATTCAACAGAATATTaaggatttctatcagcctaataGAGGTGTAGATTCCATTTTGCATTCCAGTGTtccaacttgtaaacaaggctgcatgggatttctcttaatgtgactttgcagccaatggcaatgtcccctttaggtataatgccgggagccacttgtggatttgacagctccaacacaGTTCCACCTCGGACACCGTCAAAACATCAGCTATGTGGATGGATGCTAATCCGGATCTGATTGAATCGGACCCTTCGTTTGTGGTTGTGTAGATTTCTAGTATACGCCCTAAACGTGTACATAACAAAACATTTCAGAACATATcaatatattatattttttttctttgttCTACCCAAGATGCATTTACAAATAAAATTTTAAGAAGCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU738042 lncRNA downstream 21133 76369948 ~ 76393147 (-) True G649426
TU738039 lncRNA downstream 50108 76363891 ~ 76364172 (-) True G649423
TU738037 lncRNA downstream 54010 76360036 ~ 76360270 (-) True G649421
TU738029 lncRNA downstream 64459 76349590 ~ 76349821 (-) True G649413
TU738016 lncRNA downstream 83253 76330795 ~ 76331027 (-) True G649400
TU738054 lncRNA upstream 41906 76470081 ~ 76473188 (-) False LOC110528512
TU738052 lncRNA upstream 41942 76470117 ~ 76473188 (-) True LOC110528512
TU738202 lncRNA upstream 232838 76661013 ~ 76661659 (-) True G649579
TU738203 lncRNA upstream 233590 76661765 ~ 76662054 (-) True G649580
TU738205 lncRNA upstream 236033 76664208 ~ 76664457 (-) True G649582
XM_036984087.1 mRNA downstream 86221 76283249 ~ 76328059 (-) True LOC110528507
XM_036984088.1 mRNA downstream 86226 76283249 ~ 76328054 (-) False LOC110528507
XR_005052730.1 mRNA downstream 127092 76287134 ~ 76287188 (-) True LOC118965404
XM_036984086.1 mRNA downstream 134780 76267650 ~ 76279500 (-) True LOC110528506
XM_036984085.1 mRNA downstream 222129 76178553 ~ 76192151 (-) True LOC110528503
XM_036984092.1 mRNA upstream 41912 76470087 ~ 76567637 (-) False LOC110528512
XM_036984091.1 mRNA upstream 41912 76470087 ~ 76608046 (-) False LOC110528512
XM_036984090.1 mRNA upstream 41912 76470087 ~ 76608047 (-) False LOC110528512
XM_036984093.1 mRNA upstream 180287 76608462 ~ 76659615 (-) False LOC110528513
XM_036984094.1 mRNA upstream 180287 76608462 ~ 76659615 (-) True LOC110528513
TU737941 other downstream 193349 76214701 ~ 76220931 (-) False G649327
TU737942 other downstream 198767 76214701 ~ 76215513 (-) True G649327
TU737600 other downstream 793343 75619325 ~ 75620937 (-) False G649025
TU736097 other downstream 1306364 75106897 ~ 75107916 (-) True LOC110528488
TU734363 other downstream 2602823 73810902 ~ 73811457 (-) True G646073
TU738321 other upstream 585253 77013428 ~ 77016601 (-) False G649684
TU738738 other upstream 954492 77382667 ~ 77382936 (-) True LOC110529034
TU739558 other upstream 1601069 78029244 ~ 78029753 (-) True G650755
TU739566 other upstream 1615124 78043299 ~ 78046469 (-) True G650763
TU739830 other upstream 1847973 78276148 ~ 78312502 (-) True eya2

Expression Profile