RNA id: XM_021610644.2


Basic Information

Item Value
RNA id XM_021610644.2
length 1304
RNA type mRNA
GC content 0.53
exon number 2
gene id LOC110528532
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 77187663 ~ 77197139 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agcagggagcaggtctggAGTTGTACCTAGAAACTAAGCCAAGACCTCTGGCTACTGTAATCGTCTCAACATGTATGCAAGTATGACCTCACAATGTTGCACATGTGCCATTTGAGTTCGTAGCTATGGTAACTTTTAAAAGCACCAAttaaaaacaacatttattttcaAACTATTCGTGGTGCAAGACGGCAATGCATTAGACCGAGCAGCTGACATGAAAAGAATGATGACCCCCCCGAGCGATGACAGTGACGTAAGCGATCAGCGCCACCCCATGAAGACACGCTGCGCTGGTGGCCAGGGAGGAGACAGCCCCGGCATGGACCCGAAAAAATGGATCACCTTCAAAGACCTCCATGACCGGGTCACGCAGCTGCTCTCCACTAAGCTCAACTCCTGTAACATCAAGCAGTGCAAGTCCAAACTGGACATCCTCAGTAAGTGCTCCTATTACCTGGAGGTCATGCGCCAGGACACACTCCACCAACCAGACCCGCAGCAGAACTACCTGTCCAACTCCACCATCCTCCACCTCATCGATCCCTGGAAGTTCCAGCGGATGAAGAAGCTGGGCCACAGCCAGGTGCAGATCCAGCTGAGCCTGCTGGAAGAGCTCTACGAGCAGTTCTGTAAGGGCAAAGTGGAAATGGAGGCCATAGCCAGCCAGAGCGACTATGGCGATCAAGAGGTCGCCCACATAAATGGGAGGATAGCGCATCTCATTAAGGCGTTCACGGACTTTGACTCGACACTGATGCCCGGGGAGCTGCACACAAAGCACCGGCTCATCTCCGAGACGGGCAACGCCAAGGTGCCCCAGATCCATTTGAGGCTGTCCGTCAAAATGCCCGTGATGTTCGACACGTCACGCTCGGAGGCTCTGGCCGACTGCGCCCGGCTGCACTGGGAAATGGCCGGGCAGGAGCAGCAGGAGCCTGGGGAACAGTTTGAGATCCGCTACAAGCTCCTCCAGCCGACCAACACAGAGGAAGGGAACCAGCTAGGAACGGTGACCTGCAACTCCTACTGCATACAGGTCAACAACCTGTTGCCGCAAAGGTGCTACGAGTTCACAGTGAAGCGGGCTGACGCCTGCTGCCTGGTCTACGGGTTCTGGAATGACACCATGGTGCTCAGAACCATGCCACTATCCCCAGGGGGCTTCACCGGGAgccaggagaagaggaggaggctgtTCCCCTGGTAAAGGGCTAGCGTGGCGTGAGTGCATAGCAATATgaaaataaagacattttaattttttttatctcTCTAATAAAATACATTGTCAAGATTTTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU738647 lncRNA downstream 16065 77171351 ~ 77171598 (-) True G649958
TU738642 lncRNA downstream 17092 77168782 ~ 77170571 (-) False G649956
TU738645 lncRNA downstream 17309 77168782 ~ 77170354 (-) False G649956
TU738640 lncRNA downstream 17309 77168820 ~ 77170354 (-) True G649956
TU738486 lncRNA downstream 20361 77167063 ~ 77167302 (-) True G649826
TU738683 lncRNA upstream 5255 77202394 ~ 77202734 (-) True G649991
TU738686 lncRNA upstream 7982 77205121 ~ 77206741 (-) True G649994
TU738689 lncRNA upstream 14792 77211931 ~ 77212307 (-) True G649997
TU738669 lncRNA upstream 91228 77288367 ~ 77344077 (-) False G649978
TU738670 lncRNA upstream 91228 77288367 ~ 77344077 (-) True G649978
XM_021610640.2 mRNA downstream 41941 77121611 ~ 77145722 (-) True si:ch73-267c23.10
LOC110528526 mRNA downstream 75736 77106141 ~ 77111927 (-) True LOC110528526
LOC118965366 mRNA downstream 97290 77088808 ~ 77090373 (-) True LOC118965366
XR_002474270.2 mRNA downstream 180520 77006314 ~ 77007143 (-) True LOC110528518
XM_036984102.1 mRNA downstream 208508 76799824 ~ 76979155 (-) True LOC110529031
XM_021611174.2 mRNA upstream 20921 77218060 ~ 77231065 (-) True LOC110529033
XM_021610646.2 mRNA upstream 52813 77249952 ~ 77270298 (-) False helz2a
XM_021610645.2 mRNA upstream 52813 77249952 ~ 77275885 (-) False helz2a
XM_036984106.1 mRNA upstream 52813 77249952 ~ 77275885 (-) True helz2a
XR_005052674.1 mRNA upstream 104321 77301460 ~ 77304319 (-) True LOC118965318
TU738321 other downstream 171062 77013428 ~ 77016601 (-) False G649684
TU737941 other downstream 966732 76214701 ~ 76220931 (-) False G649327
TU737942 other downstream 972150 76214701 ~ 76215513 (-) True G649327
TU737600 other downstream 1566726 75619325 ~ 75620937 (-) False G649025
TU736097 other downstream 2079747 75106897 ~ 75107916 (-) True LOC110528488
TU738738 other upstream 185528 77382667 ~ 77382936 (-) True LOC110529034
TU739558 other upstream 832105 78029244 ~ 78029753 (-) True G650755
TU739566 other upstream 846160 78043299 ~ 78046469 (-) True G650763
TU739830 other upstream 1079009 78276148 ~ 78312502 (-) True eya2
TU741554 other upstream 2256936 79454075 ~ 79455388 (-) True G652578

Expression Profile