RNA id: XM_021610645.2


Basic Information

Item Value
RNA id XM_021610645.2
length 8842
RNA type mRNA
GC content 0.45
exon number 20
gene id helz2a
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 77249952 ~ 77275885 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGACAGAGtagtgttgtaatgttgttgttgttactagGGAGGGATCTAGTGGTTGTTGACATACACCATAAATACTGCAGCACTTCCTGAAGTGTTTCTAATCCAATACAAGACATTATGACATTCAGCCTAGAAGTGTGTCGGAACTGTAGTGTAACATGAGCTTATGAATAACTTCACAGATTTTATTTCAAGAGGACAACACATCATAGCCATGGTACATTTCACATTTTCCTAAGAGAGAAAACCTGGGATCACGCTATGACTACGAAAGAGAGAATTCAGCGCCAGTTCCCTGGCACGTTCATGGAACTCTGCGAAACTTGCTTGCATCACAGACCACAGCAGTTCTCCTGTAAGGGCATCAACTTGAAGTGCAATTCCAGACACAGGCATGTTTGGAAGGCAACTCTAGTTCTTTATGACAAGAAAAATACACGGTTGTATGAGGAAGTCAGGCCGCTGCCCATCCTGCCCCACTTGAACATCAGCTCATGGCTGTACTGTAAGTACGTTGTGAATGGTGAGCCATGCTTGCATGGCGCCCATCGATGCTGGTTTGCACACAGTGAGGTAGAGATGACCGTGTGGACAGCTGAGAGCCAGGAGGGGTTTGTTCGGGCTGAGCTGCTTCAGGCTGTACAGAAACATCAGCCGGTGGTGGCAGCAGCTTCTCGGTCTCTGCCCCAGCATTATTGCAAAGCCTGCGATCTATGGTTTCCATCATGGGGAGATTTCCAGAACCACCTCAACACGTTCAATCACATCAAAAGGACCAACGAGTATAACAATGAGACAACAACTGAGTGGAAGTATCGAGACCCACCTCAAACCAACCAAGCCTACAAATTGTGTGAAAGGAGGGCCTCTACATGTGAGCTTGGGAGCAACTGTGTTGATGCTCACTCAGCGGAAGAACTACAGGAGTGGCGCACAAGAGACAAGACTGATCGGAAGACAGTTATTGCTGCTGAAGAGCAGGGTTTACTTTCATACCAGGGCAATCTACTGAGAGAGTACAAGGATATAATTAAAAAGGCTGATATTATGTCTGAGGCAGTGTCTGGTGTCAATATCAGCTGTGACAAGGACATGATGATTTCAGGTCAAAGAGAAAATGTGCCGCTGACATGGAAGTTCAGAATACAGTCGGAGAAACTACTTGCACATGTATCACTACTGAAACAGGAACCTGGAGCCTCTTTCTCCCTGGATGAAAACAGTCCTGAGCCCTGCACTTACTCCACGGGTGAATCGTTCTGTAACTCAGACATGACCTATGACATCACCGTGTCCTTCAAGTCCAACAACCCGGGTCTTTACGAACAGTGGTTGGTGTTCGACTTTGACACAAGGCCAGTGCTCCTGCAGAAACTCAAAGTTAATGTTGGAAAAGAGCCTTCCATTCAGCTAGTGGTGCCACCAGAGGACGACATCCATCCATCTTTAAATCAAGAACGCTGGCATCAGGGGAACAGGGACATCATCCCATATATGGAGAAGACAAAGGCACAGGAAAAGCTGCTTACGGAATACGAGCCTCAGATTTGTACGCCATATGAACCACTTGATGACCGCAACATGCCCATAAATCACCAGAACTACAAAGAGAGAATGCACAGCTTCCTGTACACAGAGGAGCAGGCAGAAGATCAGGTGGTTTCAAGACTCAACGTTCAAACAACCATCACTTTGTCGGTCACCCTAGAGGCCACTGTAGACGACCCTCAGTTTGGGATGAAGATAGCTCCTCTGGGGGAACTATTCTGTGCTGTCTCAGTTCCTTATAATCTCAGCCCAGACACCCCAGAGGGTTTGATGCTGAGACGAAGCATCCAATCAGCTCTCATAGCACCAGTATCTTCAGATAATCAAAGTCACAAGGTCTACGAAGCCATCATCCTCAAAGACGCCACAAGTAAGAATAAAATGCACTTGAAGCTGTCTGAAAGATGCTGCTCTGACCTGAAACTCCAAAACAATGAAACATGTGAAATGGAAGTTCAGTTCCAGCTGAATCGTCTGAGGTTTTGTGAGATGCACAAAGCCATAGATCTCCttccagacacagagagagtgttaCCAGACTTCAGGAACTGCATTGTCCCTGTGAGCAAAACACAGAAAAATTACAACCTCAATGCAAAGCAGCAAGCAGCTATGGAATTTATCATTGGAGACACTGATGGAGCAGGAAGTGTGTCACCACTCCTCATTTATGGACCGTTTGGAACTGGGAAAACCCTTACTCTAGCTACGGCAGCTAAAGAGCTGGTACGGCAGCCTCACAATAGAGTACTGATCTGCACCCTTACAAACAGTTCTGCAGATTTATATGTGAAAGGTCATTTCCATGAGTCTGTCAACTCTGGAGATCTTGAAATCAAACCTCTTAGAATAAAGGCAGAGGAATCATCGGTACAATCTACTGATGTGATCACCTTACAGTACTGTCATCGTTCCAAAAACGGACAATTCTTCTCCCTACCTGACAAAGATACAGTCGACTCCTGTAGGGTGGTCATAACAACCACCTCAATGGCAAGGCACTTACATGACCTGAAGCTCCCTGGCGGCTACTTCACCCACATCCTGATTGACGAAGCGTCCCAGATGCTTGAATGTGAAGCTCTGATGGCCCTTGGTCTGGCTGGGCCAGTAACTCGAGTGGTTCTAGCTGGAGATCACATGCAGATGGGACCAAAGCTCTTTTCAGTGGACGATGACCAACGCTCCAATCATACCTTGCTGAACCGTCTGTTCCACTACTATCAAGCCCAAGAGAGTAGTGCAGCTTTGAAAAGCAGAATCATTTTCAACGAGAACTATCGCTCCACCAAAGAGATAGTAGAATTCGTGTCCACTAACTTCTATGTTGGCAAGTCTGATGCCATCAAGGCTGTAGGTAATGTCCCAGCTCATCCGAACTGCCACCCCCTGAGGTTCCACCATATCAGAGGAGAATCTCACCTGGACAACACATCCATGTCGTGGTTTAATCGTGAAGAGGTTGCATCCGTGGTTGAAGTAGTGCAAAATCTGCTCAGAGATTGGCCACCTGCATGGGGAAATCAGGATCAAAGCTCAATTTGTGTCCTGTCTGAAGGATGCCAGGTTTCACTGATCAGGAAAGAGCTTCGGAAAAAAAGACATGGCCAAGTGACTGTGGAAAATATAGCCAATGTTCAAGGCAAACAGTTCAGGGCAATAGTATTGACAGCCGTTCAAACCCGTGACAGCCTTCTTTCCTCTGACTCACTTTGTCACGAGTTTTTCAACGATGCTCGCGTACTGAACACGGTCATGACTAGGGCTCAATCCCAGGTTGTTGTGGTTGGAGATGCTGCTGCTCTCTGCTACTTTGGGAAAAGCTCAAGGATATGGAAAGCCTACATAGACCACTGCATCAGCAAAAACAGTGCAGATCCACAAACCCTTACTGAAGATTACTTGAAACAAGAAGTAAGAGAGATTTCAAGATTTGTCAAAGGGGACGAGGAGGACAACAGTGATAGTGAGTCATCCATATCTGAGATACCCGACATAGATGACCCAATACTGAGGGAGCTTCTTGACGAGGGTAAAGATGTACGAGTCACTGTAACAGCTGACGGCCTGTTGGGTATCACCCAGGGGGAGCCAATTGTCAACCCATTAAATGGACTTGAGATGAACACAAGCCAAGACAGCTCCCCTTTGTACCTTCAGGCATTGATAAACAGAGACCCGAGTATCTACAAACACTGTCACTTGAGTTTGGAGAGGTTTGACTCAGGCTACGCCATACCTCTTGAAGAGCCCTCCCTCCGCATTTCTATCAAAGGTAGAAAGAATATTGGTCGTTCTTTTCCTGGAGATCAGGTTGTTGTGGAGATCTTGGACAATGAGTGTCATCCCCCAAATGGGAAAGTGCTAGATGTGGTGAAGGATGAAAATGCCTCCTTGGTGTTTGTCTGTACCATTGATAACTATGACAACCAGGTGATGACACCCATCAACAACTGCATCTCCAAAATTTACACCCCAGTTTGGAGGGACAAGCCAAACTACATTGCCGTGCGAAAACTGGAGGATCTGAGAGTTGAAAAATTTGTGAAGATAAATGAGGAATCCAAAAGAAACAATCTCTTTGTTGTCAAAGTCTTGAAGTGGCGAGAGCAATTTCGATACCCTTTAGGAGTTGTCGTAAAAGTCCTTCCCAAAGTGGCCTCTTTAGATAGTGGACTAGAAGTATTGGACATAGAGTATCAACTGACAAGGGCCACTTCTGTTGAGAATGACCAGGAAATTCTCAAGGAACTGAACACAGATACGCAAAAACGAAGGTGTTATCAAGAATTCATAACATTTACAATTGACCCAGCACATTCCAAGGATCTTGATGATGCCATCAGTGTAAGAGATTTAGGTCAACACTACGAGATTGGAGTTCACATTGCTGATGTTGCAAGCCGTGTGACCAAGGGCAGCCTATTGGACAAAGATGCACAACAGAATGGAAGTGCTTTTTATCCCCCTGGAAAGGAGCCTGTTTATATGTTCCCACTTTGTCTGAGCACCGAGCATTTCAGTCTACTCCCTGGATGTGAACGAAATGCCATATCACTGATGGTGCAAATTGACAAGAAAACAGACCGCATCAAGACAAGTAAGTTTAGCCTATCTAAAATAAAGTCTGATAGAAAGTTGTCATATGAGGAAGCTGAAAACATCATCCAAAACTCTGATGATAATGGCCAACGATATGACACTTTAGAGGGCTGCCTCGCCAAAGCATGTCACTTTTCTGAGGTTCACAGAAAGGACAGGAAACAGGAAGACTGGCACTATAAATCCCCTGATGATGATGTAATCGTTGGTAGAAGACGGTCTCATAAGATGGTGGAAGAGCTCATGGTTATGTTTAACCACGCTGTCACTGAACTGTTGCTCAAAGATGCAAAGACAGTCAGCTGCACCCCAGTCAGATGCCAAGACAAGCCAAACACAGAGAAGCTTTGTCAACTAAAAGATAAATACAGTTCTCTGATTCCCCTGTCCATTCATTTCTGCCACTGCATTGATCAGATTGGTAACGTTGATGATAACCAGAGGGATGCGGTTTCTAAACCTTACCCAGATGTGTCCAATCAGATGCTTGCAACGAGAACAGAGAATAAAGACCATCATGGTCAAGTTGTCCAGCCATCTGAGACATTCTCTCTATTAACATCCATTGTGAGGAGTCTTGAGTCAGCATTTcaagacaaggatatccctagaATTGTGGACCTGATAGCAACTGATGACATTCATCCCCAGCTACTGCCTTTGATCATTGAACTCAAGAAGACGATCCATAGAGCATATGTTCTACGCTCTAACTCAACATACCTATCTAGAGTTGGCCACTATGACCTTCAGCTTGAAAGCTACACTTGGGCTTCCTCGCCCATTCGTCGGTACGTGGACGTTATTGTTCAGAGGCTCCTGCACTCAGTTCTTGAAAATAAAGCAGTCAGGTACACTTCTCTGGAAATTGACCATGCGTGTCTGAGTTTTTCGAGAAAATCTGAAAAGCAAAAAATGTATGAGAGGAAAGCACGTTGCTTGAGTTTTGCATCGCAGCTGAACAATCAAAGTGCCCAGAAGATAGCCTTTGTCATTGATGCCTCCTCAGCTGGAAACAGTTTAAGAGTGTATTTTCCATTTAATCGATCCTCCATGCCAGAAAATATCCTTATCATGTATAGGGATCTGCAGTTGACAGACCAACCAGAGTTCAATGAACATGACAACCATGTGGTTCTGAAATGGAAGAGAAGAGTATACTCCTTCACAAATGAGAACATCCATGCTGAACTGCAACAACAGTCACCTCATCCATTTGTGACATCAGTGCCAACAGACTTGTGGAAAGGGATGCTGTCAGCTCTGAAGGAGGAGAATTTGGACATCATGTTCCAATCCCTACAGACCATCAGCTCAAGTGTCAAAGATAACCAACAGGTCTGCTCAGGTCTGCTCCAATATACACCAACGGCCAGAACCAATCCAAATCCAGGTCATTACATTGAATTGCCATTGAGGGTAAAGTCTGGTGAAACACTGGAGGTGCAACTGGGCACTGACACACAACGGGGATTATTAGTACCTGTGGTTCAGATGCTGGTTGTACGTAAAAAGTTTGAGATTTGCTTGGAGCACTCAAAAGACCCAACTCTGTGTTTCTCCAAGTATGCATTCCATTCATCGAAGAAAACATACACCACTTACCAGGAGTATCAGAAGATATGGAAACCATTGTGTGAGATGGAGTCAGCCTCCAACGCTGTAACAGAAAATGACAGCATTGTCCTTGAAGATGTGCCTTTGACATGGAAACAGATACAGAAGGAGAGTCAACTCGGTGGATTCTTCCAGTTGTCACTTGAGAAGATGAAACAGTGGGCCATTGAGTATGGTCTCAAACACAGCTTTCTGTGTATCCGCATGAGGTACCAAAATCGAGTGGATTTGCCAAACAATGGCGCTGATGATGATCAGCATGTGGACCTCAGCAATATCCCATCTCTCATTTGGGTTGCTCATGGAATAACCACTGGGGTCACTGATGAGGATGAGGCTAAAAACCTCTCCTATGTCCAGATAGACTTCCGGATTAATCACATGTGCATGGCCAAGATTCCAGACAGGGTCTTCGGGAAAGATACAAGATTCACAGTAGAATTAATTCCAAAGCTGTTACCTGATATGCGTAAAGAGGCTGCCGTCGACAACCTCACTCAGGCTAATGAACTTGTGAAGAACATTGCTCTTGGCAAGAGGACAAACTCTGCACCTGTAACTAAAGAGCTGAGACCTGCCAGGTTTGAGATCAAACTTCCTTCCTCCAAGTTTCCTGATCTGAATATTAGTCAAACCAAAGCTATTAAAGAGGCCCTCGACAACCGATTCACTCTCATTCAGGGGCCACCAGGCACTGGGAAGACGGTGGTTGGAGTCCACCTTGTTTATTGGTTCTTTCTGCAAAACCAAAAAGACCCAAACCACCTAAGGCCTAAAGCTGCTGGGGGGTCTTCAAAGAGGAGGTGCATTCTATATTGCGGACCCTCTAATAAATCGGTGGACGTTGTAGCTGGTCAACTTCTGAAACTCCGGAAGGTGTTGAAGCCACTTCGTGTTTACAGTGAGCAGATGGAGATGTTGGAGTTTCCCTACCCTGGCAGCAACCTGAAGCTATCACGCAGGTCAATCAGGGAGGAGAGACCCAAGAGAGAGCTCAGTTCCATCACATTGCATCATCTTATTCGGATGGCTGAGAACCCATTCTCCAATGAAATTAGAAATTTTGATGCAAGAATTAAAAGGGGAGAGGAACTCACAGACATGGAGATTGAGAGCTACAAAGACCTCCTAAGTCAAGCTCGGAATCATGAGTTGATGAGGCATGATGTCATTCTCTGCACTTGTACTGCGGCGTCAAATCCCAACTTCTACAAACTGGACTTGAAACAGATTATCATTGATGAGTGTGCCATGGCAACTGAGCCTGAAGCCTTCATCCCCCTTGTGACACATAAACCTGAACAGATTGTTTTACTCGGCGATCACAAGCAATTGCAGCCCATCACGCACAGTGATCTTTCAGCAAGGTTGGGCATGAGGAAATCTCTGTTTGAGCGTTACATGGAAAAGGCGTTGATGCTTGATACGCAGTACAGAATGCAAGAGCGCATTTGTGAGTTTCCTTCAAAGGAGTTCTACAATGGTATTCTCAAGACTGGAGCAACTCGGAAAGACAGTGTCCTGCTCGCTCAGTCTCATCGTCTGACGCCCATCCTTTTTGGACACGTTTACGGAAAAGAGATCAGTCTTGTGGTCTCCACCGAACGGGGGAATGAAAACTCAAAGGCCAACTCGGCAGAGGCTGAGGAATCGGTTCGCATCGCCTCTCTGTTGATCAAGCGTGCTGGGGTGGCGGCTAGCGACATAGCTATTCTGACACCATACAATGCCCAGGTAGCCAAGGTGAACGAAACCCTGGAAATGAACCATATCCAGAACGTCAACGTGAATACCATCACAAAGAGTCAAGGAAGTGAATGGCGTTATGTCATCTTGTCTACTGTGCGCTCTTGTCCCAAGTCGGAAATTGAAACAGAGCCAACCAAAGCATGGCTCACCAAGAAGCTTGGTTTTGTCATGGACCCAAACCAAGTCAATGTGGGCATCACTCGGGCTCAGGAGGGACTGTGCATTATTGGAAACCAAGAGTTGCTGAGGTGCAGCTCACTGTGGAAGAGTCTGCTGGTTCATTACCAGCAATGTGGCTGTGTGGTGGATCCTGCTAAGGACATTCAAGTTCAAAACCCACACGTCAAAACCAAATCAAAGGACAAAAGAGCCTCAAAGTTTCAAAACAGAAAAAGAAAATGCTAGAGATTCTGCAGTACCCATAATTGACTGCTGGGGATCAGTTAGAAAATTGAGATATGCATTGCTATGGTGCCGCTTGAAATCTTGATCTTTAACGCTTCTGAGAAACTGAAGACTTTTGCACTACTGATGAGAGCTAATGAATTTTTGACAAATGAACATAATATGTACTGTTACACATACAATGTTATTGTAATGATATTTCAGAACTATGTATAAAAGAAAAGCAACAATCATTGCACTGGTAATACAAGACATTTAATATATATTTCTACATGTTTGTTGCTAACCTTGACATTTTACACATTTTTTATTCGCTTTTTAAGTGTCAGACGTGCTTTATACTCAGTCAGATGTTTTGTATGTTTTAGAATGGTTGTGAAATGTTTTAATCATTGTATATTAAACTAGCCATactatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU738689 lncRNA downstream 37645 77211931 ~ 77212307 (-) True G649997
TU738686 lncRNA downstream 43211 77205121 ~ 77206741 (-) True G649994
TU738683 lncRNA downstream 47218 77202394 ~ 77202734 (-) True G649991
TU738677 lncRNA downstream 54067 77195544 ~ 77195885 (-) True G649985
TU738676 lncRNA downstream 54939 77194542 ~ 77195013 (-) True G649984
TU738669 lncRNA upstream 12482 77288367 ~ 77344077 (-) False G649978
TU738670 lncRNA upstream 12482 77288367 ~ 77344077 (-) True G649978
TU738737 lncRNA upstream 103571 77379456 ~ 77380682 (-) True G650044
TU738751 lncRNA upstream 125677 77401562 ~ 77401987 (-) True G650057
TU738745 lncRNA upstream 129037 77404922 ~ 77407043 (-) True LOC110528538
XM_021611174.2 mRNA downstream 18887 77218060 ~ 77231065 (-) True LOC110529033
XM_021610644.2 mRNA downstream 52813 77187663 ~ 77197139 (-) True LOC110528532
XM_021610640.2 mRNA downstream 104230 77121611 ~ 77145722 (-) True si:ch73-267c23.10
LOC110528526 mRNA downstream 138025 77106141 ~ 77111927 (-) True LOC110528526
LOC118965366 mRNA downstream 159579 77088808 ~ 77090373 (-) True LOC118965366
XR_005052674.1 mRNA upstream 25575 77301460 ~ 77304319 (-) True LOC118965318
XM_021610649.2 mRNA upstream 73193 77349078 ~ 77354314 (-) False LOC110528536
XM_036984109.1 mRNA upstream 73193 77349078 ~ 77355409 (-) False LOC110528536
XM_036984108.1 mRNA upstream 73193 77349078 ~ 77355461 (-) False LOC110528536
XM_036984110.1 mRNA upstream 73747 77349632 ~ 77354316 (-) True LOC110528536
TU738321 other downstream 233351 77013428 ~ 77016601 (-) False G649684
TU737941 other downstream 1029021 76214701 ~ 76220931 (-) False G649327
TU737942 other downstream 1034439 76214701 ~ 76215513 (-) True G649327
TU737600 other downstream 1629015 75619325 ~ 75620937 (-) False G649025
TU736097 other downstream 2142036 75106897 ~ 75107916 (-) True LOC110528488
TU738738 other upstream 106782 77382667 ~ 77382936 (-) True LOC110529034
TU739558 other upstream 753359 78029244 ~ 78029753 (-) True G650755
TU739566 other upstream 767414 78043299 ~ 78046469 (-) True G650763
TU739830 other upstream 1000263 78276148 ~ 78312502 (-) True eya2
TU741554 other upstream 2178190 79454075 ~ 79455388 (-) True G652578

Expression Profile