RNA id: XR_005052674.1



Basic Information


Item Value
RNA id XR_005052674.1
length 782
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC118965318
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 77301460 ~ 77304319 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCAGGGCCTTGTGGAGCACCTGTCGCTCGTGCTCCCGCTTCTCAGCTAGCTGCTTCAGCACCAGGGCCTCCtgagactgcagagagagacgagggagagagatgCTTCCAGCCTCTTCTGGAGCTCGTCCGGGGAGAGGTCCTTCTTGGGAGCAGAAAGCAGGGGCTGGGGCCTGTCCGgagagaggtcagcaggggccTTCAGGATGATCTCGAAGGCCTGGCCGGATGCCCGCTTGTTCAGGGACTTCACCTCCATGTCTGTGGAGAACAGCAGgtgggtTAGGTTCCCTCCACTCTAAATGGAAATGGATGAAGCTTGCCAGAAAAAAACGTTCAGCCAAATTACTAGGGAGGCCGTCAGTCAACTTACTAAGGAGGCCGTGCAGACAAGTTACTAAGGAGGCCGTTCAGTCAACTTACTAAGGAGGCCGTTCAGTCAACTTACTAAGGAGGCCGTGCAGACAAGTTACTAAGGAGGCCGTTCAGTCAACTTACTAAGGAGGCCTTTCAGTCAAGTTACTGGGAGCACTGCCACAAAAACAGCCCAAGCTGCCAGTAGCATCTCCACTGAACCCTGTGCCTCGTGTAAATAATATATAATTATAACAAGTGTTTATTCACAACCGCAGAGAATTATATTTTGTTTCACCTCTTGACAcctcttgcacacacacacacacacaatatcatacgcactatatacacacacacacacacacacaatatcatacacactatacacactatacacacacacacacacacacacacacacacaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU738689 lncRNA downstream 89153 77211931 ~ 77212307 (-) True G649997
TU738686 lncRNA downstream 94719 77205121 ~ 77206741 (-) True G649994
TU738683 lncRNA downstream 98726 77202394 ~ 77202734 (-) True G649991
TU738677 lncRNA downstream 105575 77195544 ~ 77195885 (-) True G649985
TU738676 lncRNA downstream 106447 77194542 ~ 77195013 (-) True G649984
TU738737 lncRNA upstream 75137 77379456 ~ 77380682 (-) True G650044
TU738751 lncRNA upstream 97243 77401562 ~ 77401987 (-) True G650057
TU738745 lncRNA upstream 100603 77404922 ~ 77407043 (-) True LOC110528538
TU738752 lncRNA upstream 107073 77411392 ~ 77411620 (-) True G650058
TU738756 lncRNA upstream 110705 77415024 ~ 77415235 (-) True G650062
XM_021610645.2 mRNA downstream 25575 77249952 ~ 77275885 (-) False helz2a
XM_036984106.1 mRNA downstream 25575 77249952 ~ 77275885 (-) True helz2a
XM_021610646.2 mRNA downstream 31162 77249952 ~ 77270298 (-) False helz2a
XM_021611174.2 mRNA downstream 70395 77218060 ~ 77231065 (-) True LOC110529033
XM_021610644.2 mRNA downstream 104321 77187663 ~ 77197139 (-) True LOC110528532
XM_021610649.2 mRNA upstream 44759 77349078 ~ 77354314 (-) False LOC110528536
XM_036984109.1 mRNA upstream 44759 77349078 ~ 77355409 (-) False LOC110528536
XM_036984108.1 mRNA upstream 44759 77349078 ~ 77355461 (-) False LOC110528536
XM_036984110.1 mRNA upstream 45313 77349632 ~ 77354316 (-) True LOC110528536
XM_036984458.1 mRNA upstream 76435 77380754 ~ 77390369 (-) False LOC110529034
TU738321 other downstream 284859 77013428 ~ 77016601 (-) False G649684
TU737941 other downstream 1080529 76214701 ~ 76220931 (-) False G649327
TU737942 other downstream 1085947 76214701 ~ 76215513 (-) True G649327
TU737600 other downstream 1680523 75619325 ~ 75620937 (-) False G649025
TU736097 other downstream 2193544 75106897 ~ 75107916 (-) True LOC110528488
TU738738 other upstream 78348 77382667 ~ 77382936 (-) True LOC110529034
TU739558 other upstream 724925 78029244 ~ 78029753 (-) True G650755
TU739566 other upstream 738980 78043299 ~ 78046469 (-) True G650763
TU739830 other upstream 971829 78276148 ~ 78312502 (-) True eya2
TU741554 other upstream 2149756 79454075 ~ 79455388 (-) True G652578

Expression Profile