RNA id: XM_036984109.1


Basic Information

Item Value
RNA id XM_036984109.1
length 1680
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC110528536
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 77349078 ~ 77355461 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCTGGGCTAAAGCCAACCCAGAGGAGGGCGACCCGCTCATAGTGTGCTGAAGAGGAAGCTCTGGCCAGGACGATCCTGAGAAGattcgaaaatgctaattagcatcaaagtagatatcatgcaagactacaaatccctgcaagctcctgcacgttcTCTCCGGCTGACACCTTTGTTAACAGaccttTCTGGAACAGACTAAGACCAAGTTCAGTAAGAACTACAAGGGAATGAATTTGTCCAAAATCACCACTACAGTTGGGCTTAACATCGGCACAATTGATGTGGGCAAGGCTCGTCTAATGTTCTGGGACCTTGGTGGTCAAGAGGAGCTTCAGTCGCTGTGGGACAAATACTATGCTGAGTCCCACGGAGTGATCTATGTGATAGACTCCACCGATGAGGAGCGCCTATCAGAATCAAAAGAGGCCTTTGAGAAAATGATCAGCAGTGAGGTTTTGGAAGGTGTGCCTCTCCTGGTGCTCGCCAACAAGCAGGATGTGGAGAACTGCATGTCTGTGCCAGACATCAAAACTGCTTTTAGCGACTGTGCTCCAAAGATTGGGAAAAGAGATTGCCTGGTGCAGCCTTGCACAGCCCTAACAGGGCAGGGGGTTAACGAAGGCATTGAGTGGATGGTGAAGTGCGTCATCAGAAACATTCACCGGACACCGAGACAGAAGGACATCACATAGAACAAGCCATGACCTTCCCAACTCCAGAGCTCCCACAACCAGGAGGTATTCATTTGCCACCAAATGgtagaaaacagactgaaacaaggAGGGACTATATGGACTTACTGTCTAATATGAACCGTTTTCGATTGAAATGCAACCTTAATGAATACGAACGACCCAGGTGTCCCTTTTACTACAATGTGACTTCCAGAAACCGTGATGAACCCTACCCTCTAGCCCCGGCTCCATGTCCTCTTATTTGGGTGCTCTGAACTAATTTAGTTTTCAGATGCAGCTTAGCGTCAAGGGGATACAATTGGGGAAACAATTGATTATTGTGTATTATTTGGTTATGTACCTTGAGGTGTAAAGCTTTTGAAGGCTTTTTCCTTTTGGCCTCAGCTAATGTGTGTCTTTCTGATCAAACTATTATAGTGTCATCGTGTCGTTAGTTTCTCCCTGGCTCTTAAGTACCTCCCTTCGGTAATATAATTCCAGGACCtctattcataaagcatctctgaataggagtactgatctaggatcagtttagccttttagatcataaagAATCAGATTTATATGGATTATATTACTCTCAACCCAATTAGGCTTAGTAGTCTCATTTAACGGTCAAGAGGATGAAACATGACAACTTTATGATTCATATTATGCAACGACACTACATGTAATGGAATTGTACATTGTAACAGAGGGTCAACGATATATTCATAGACGGGAAATACTAGTTTTCGAGTTTGCAATGCCgtgtgtggtgtttgtgtatggttgagtaccaaatggcaccccatagtgctctggtcaatagtagtgcactgtatagggaataggatgccatttgggacacgccCTCTCTTTTTACTCGGTCAGTCTAACCTTGGTGACATATGTAAAGTAATGCCGATGATCAGGCGGAAAACTTATTTTAATTACAGTATGAAGAAGATTATgtaataaacatttcagaacagtTAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU738669 lncRNA downstream 5001 77288367 ~ 77344077 (-) False G649978
TU738670 lncRNA downstream 5001 77288367 ~ 77344077 (-) True G649978
TU738689 lncRNA downstream 136771 77211931 ~ 77212307 (-) True G649997
TU738686 lncRNA downstream 142337 77205121 ~ 77206741 (-) True G649994
TU738683 lncRNA downstream 146344 77202394 ~ 77202734 (-) True G649991
TU738737 lncRNA upstream 24047 77379456 ~ 77380682 (-) True G650044
TU738751 lncRNA upstream 46153 77401562 ~ 77401987 (-) True G650057
TU738745 lncRNA upstream 49513 77404922 ~ 77407043 (-) True LOC110528538
TU738752 lncRNA upstream 55983 77411392 ~ 77411620 (-) True G650058
TU738756 lncRNA upstream 59615 77415024 ~ 77415235 (-) True G650062
XR_005052674.1 mRNA downstream 44759 77301460 ~ 77304319 (-) True LOC118965318
XM_021610645.2 mRNA downstream 73193 77249952 ~ 77275885 (-) False helz2a
XM_036984106.1 mRNA downstream 73193 77249952 ~ 77275885 (-) True helz2a
XM_021610646.2 mRNA downstream 78780 77249952 ~ 77270298 (-) False helz2a
XM_021611174.2 mRNA downstream 118013 77218060 ~ 77231065 (-) True LOC110529033
XM_036984458.1 mRNA upstream 25345 77380754 ~ 77390369 (-) False LOC110529034
XM_021610655.2 mRNA upstream 49479 77404888 ~ 77463689 (-) False LOC110528538
XM_021610654.2 mRNA upstream 49479 77404888 ~ 77463817 (-) False LOC110528538
XM_036984113.1 mRNA upstream 49479 77404888 ~ 77463817 (-) False LOC110528538
XM_036984112.1 mRNA upstream 62918 77418327 ~ 77463817 (-) False LOC110528538
TU738321 other downstream 332477 77013428 ~ 77016601 (-) False G649684
TU737941 other downstream 1128147 76214701 ~ 76220931 (-) False G649327
TU737942 other downstream 1133565 76214701 ~ 76215513 (-) True G649327
TU737600 other downstream 1728141 75619325 ~ 75620937 (-) False G649025
TU736097 other downstream 2241162 75106897 ~ 75107916 (-) True LOC110528488
TU738738 other upstream 27258 77382667 ~ 77382936 (-) True LOC110529034
TU739558 other upstream 673835 78029244 ~ 78029753 (-) True G650755
TU739566 other upstream 687890 78043299 ~ 78046469 (-) True G650763
TU739830 other upstream 920739 78276148 ~ 78312502 (-) True eya2
TU741554 other upstream 2098666 79454075 ~ 79455388 (-) True G652578

Expression Profile