RNA id: XM_036984110.1


Basic Information

Item Value
RNA id XM_036984110.1
length 1474
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110528536
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 77349078 ~ 77355461 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACAAGTCCCACAATGCATTGCTTTCGTGCCTTCATACATTCAGGTGGCCACCGTGTTTACTAAAATGAGACTAGATAAAATACGATACCGCTGTCAAAGTAAATATAGCATGATGTCATGTTGTTGAGATAGCTAGCGTGCCCTTGATCTCCTTTTGCGATTTGTGAGTTGCTGAAATTGTCCGCTAGCAAATATCGGTTTATACTCGTCAGCGGCATTAACGAGATATACAGCTATAAAAGTTAGCATTAGCAAGCTACTGTAGTTAGCCAAGTATTTATGCCTTGATTGGCGCATTAGTTATATTTTACTTTAGTGTTTGGTGTCAAGTCAGCTAGCTAGTATCGATTACGAActagtaacgttagctaacttgcTTGCTTCAAACcacaggtaacgttagctagctaaacagctaGTCAGGTAACAGTTAGCTAATTCGACTTGCTAACTCTGGCTAGCCTCACAGCTGGATCTTTCCACGATGTGAGTTGGTGCTCGCCTTGCGCCTAAgctagtgtttgtttacaatccTAAGATGTACACCTTATTATCTGGTCTGTACAAATACGTGTTCCAGAAGGACGAATACTGCATCTTGATCCTAGGACTGGACAATGCAGGAAAAACGaccttTCTGGAACAGACTAAGACCAAGTTCAGTAAGAACTACAAGGGAATGAATTTGTCCAAAATCACCACTACAGTTGGGCTTAACATCGGCACAATTGATGTGGGCAAGGCTCGTCTAATGTTCTGGGACCTTGGTGGTCAAGAGGAGCTTCAGTCGCTGTGGGACAAATACTATGCTGAGTCCCACGGAGTGATCTATGTGATAGACTCCACCGATGAGGAGCGCCTATCAGAATCAAAAGAGGCCTTTGAGAAAATGATCAGCAGTGAGGTTTTGGAAGGTGTGCCTCTCCTGGTGCTCGCCAACAAGCAGGATGTGGAGGCAGGGGGTTAACGAAGGCATTGAGTGGATGGTGAAGTGCGTCATCAGAAACATTCACCGGACACCGAGACAGAAGGACATCACATAGAACAAGCCATGACCTTCCCAACTCCAGAGCTCCCACAACCAGGAGGTATTCATTTGCCACCAAATGgtagaaaacagactgaaacaaggAGGGACTATATGGACTTACTGTCTAATATGAACCGTTTTCGATTGAAATGCAACCTTAATGAATACGAACGACCCAGGTGTCCCTTTTACTACAATGTGACTTCCAGAAACCGTGATGAACCCTACCCTCTAGCCCCGGCTCCATGTCCTCTTATTTGGGTGCTCTGAACTAATTTAGTTTTCAGATGCAGCTTAGCGTCAAGGGGATACAATTGGGGAAACAATTGATTATTGTGTATTATTTGGTTATGTACCTTGAGGTGTAAAGCTTTTGAAGGCTTTTTCCTTTTGGCCTCAGCTAATGTGTGTCTTTCTGATCAAACTATTATAGTGTCATCGT

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07952 ARFRP1; ADP-ribosylation factor related protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU738669 lncRNA downstream 5555 77288367 ~ 77344077 (-) False G649978
TU738670 lncRNA downstream 5555 77288367 ~ 77344077 (-) True G649978
TU738689 lncRNA downstream 137325 77211931 ~ 77212307 (-) True G649997
TU738686 lncRNA downstream 142891 77205121 ~ 77206741 (-) True G649994
TU738683 lncRNA downstream 146898 77202394 ~ 77202734 (-) True G649991
TU738737 lncRNA upstream 25140 77379456 ~ 77380682 (-) True G650044
TU738751 lncRNA upstream 47246 77401562 ~ 77401987 (-) True G650057
TU738745 lncRNA upstream 50606 77404922 ~ 77407043 (-) True LOC110528538
TU738752 lncRNA upstream 57076 77411392 ~ 77411620 (-) True G650058
TU738756 lncRNA upstream 60708 77415024 ~ 77415235 (-) True G650062
XR_005052674.1 mRNA downstream 45313 77301460 ~ 77304319 (-) True LOC118965318
XM_021610645.2 mRNA downstream 73747 77249952 ~ 77275885 (-) False helz2a
XM_036984106.1 mRNA downstream 73747 77249952 ~ 77275885 (-) True helz2a
XM_021610646.2 mRNA downstream 79334 77249952 ~ 77270298 (-) False helz2a
XM_021611174.2 mRNA downstream 118567 77218060 ~ 77231065 (-) True LOC110529033
XM_036984458.1 mRNA upstream 26438 77380754 ~ 77390369 (-) False LOC110529034
XM_021610655.2 mRNA upstream 50572 77404888 ~ 77463689 (-) False LOC110528538
XM_021610654.2 mRNA upstream 50572 77404888 ~ 77463817 (-) False LOC110528538
XM_036984113.1 mRNA upstream 50572 77404888 ~ 77463817 (-) False LOC110528538
XM_036984112.1 mRNA upstream 64011 77418327 ~ 77463817 (-) False LOC110528538
TU738321 other downstream 333031 77013428 ~ 77016601 (-) False G649684
TU737941 other downstream 1128701 76214701 ~ 76220931 (-) False G649327
TU737942 other downstream 1134119 76214701 ~ 76215513 (-) True G649327
TU737600 other downstream 1728695 75619325 ~ 75620937 (-) False G649025
TU736097 other downstream 2241716 75106897 ~ 75107916 (-) True LOC110528488
TU738738 other upstream 28351 77382667 ~ 77382936 (-) True LOC110529034
TU739558 other upstream 674928 78029244 ~ 78029753 (-) True G650755
TU739566 other upstream 688983 78043299 ~ 78046469 (-) True G650763
TU739830 other upstream 921832 78276148 ~ 78312502 (-) True eya2
TU741554 other upstream 2099759 79454075 ~ 79455388 (-) True G652578

Expression Profile