RNA id: XM_036984458.1


Basic Information

Item Value
RNA id XM_036984458.1
length 2073
RNA type mRNA
GC content 0.55
exon number 6
gene id LOC110529034
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 77380754 ~ 77390369 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCCCACACTTTCAGTGAAGCGTACAGtgtgTAGCCACCCCAGGGTGCGGGCTCAGGCAGAGGACAGGCTACTGAGGACTCTGTTCAGCCATTACAACAAACTGGCACGCCCTGTGGCCAATGTCTCTGATGTGGTGCATGTGCACTTTGGGTTGTCCATTGCCCAGCTCATTGATGTGGATGAGAAAAATCAAATGATGATCACCAATGTCTGGGTGAAACATGAGTGGAATGACTACAAGCTCTGCTGGAATCCAAAGGAATACGAGAATGTCACCTCCATGCACATCCCATCCCATCTAATCTGGAGACCAGATATAGTTCTTTACAACAATGCAGATGGTGATTTTTCCGTGACCCACCTGACCAAGGCCCACCTGTTCCACGACGGGCGCATCAAGTGGGTTCCCCCGGCCATCTACAAGTCCTCCTGCAGCATCGACGTCACCTTCTTCCCTTTCGACCAGCAGAACTGCACCATGAAGTTTGGCTCGTGGACCTACGACCGCTCCAAGATCGACCTAATCAGCATGGCGGGCAATGTGGACCAGATGGACTACTGGGAAAGTGGCGAGTGGGTGCTGGTGGACGCCGTGGGCAACTACAACATCAAGAAGTACGAGTGCTGCCACGAGGTCTACTCTGACATCACCTATTCCTTCATCATCCGAAGACTACCGCTGTTCTACACCATTAATCTGATCGTGCCCTGTCTGCTGATCTCCTGCCTGACTGTCCTGGTGTTCTATCTGCCCTCTGACTGTGGAGAGAAGATCaccctgtgtatctctgtgttgctgtctctcACCGTCTTCCTCTTGCTTATTACCGAGATCATCCCGTCCACCTCGCTGGTCATCTCGCTCATCGGGGAGTACCTCCTCTTCACCATGATCTTTGTCACCCTTTCCATCAGCATCACCATCTTCGTGCTCAACGTACACCACCGCTCGCCGCGCACGGACACCATGCCCCGCTGGGTGCGCCGCGTCTTCCTGGACGTTGTCCCCGGCTTCCTGTTCATCCGGCGGCCTGCCGCGGTCAAGGACAACAAGAAGAGGCTGGCGGAGGCCATGCAGAAGAGGGCCATGCTATGGGGTGAGCTGGAGGCTGAGCTGGAGGTCCAGGAGATCCTGGCccgctccccttctctcttcttggGCCGACCCATGGAGGGTTCCCTGCCCCCCAAGCTTccccagcaacagcagcagccccTGGACAAGTCCAGCCAGTACTCCATCCTCCCGGAGGAGCCGACCACCTCGTCCCAGCCAGgctgctctcctctgttcctccaccctctcttcccgCCCATGGACAAGCACCACGCGGCCAGGCCCAAGATGCGTTCCCTCAGCTTACAGTACGGCCTGGGTGAGAGGGAGCAGCCCCAGACCAGCATCCGCTGTCGCTCGCGCAGCATCCAGTACTGCTGCCTGCATGAGGAGGTCTCCTCCATGGGTAACGGCATGCAGCGGCCTCTCTCTCAGCACCCGTccctgatggaggagaggaagcagAGCTGCTCAGCTGTCTGCAAGTATCACTCAGGCCTGGCCAAGGAAGCCAAAGCAATGACCAAGGACCAGCGGCTCCTCGTCTTATCCCCGTCCATGAAGATGGCCATGGAAGGTGTGCAGTACATCGCAGACCACCTCCGTTCGGAGGATATCGACTTCTCTGTGAAGCAGGAGTGGAAGTACGTGGCTATGGTCCTAGACCGGATCTTTCTGTGGTTGTTCATCTTGGTGTGTCTCCTGGGGACCCTCGGACTCTTCGTCCCTCCCTGGCTGGCTGGAATGATAGACCTATCTGTCTGACTCCAAACACTTCTGAAGCCATTGACCCTATGCACATTCAAGTTGTACAACTGATGAACAACTCACTTGCCACAATTTTGTTCTGCACAACATTAATTACACAAGCATTGTGGAGACACTGCACAATGCTTGTGTAAACATTTGTGTGCAGAAAATATCAGTTGTAAGGACAACCATTGTGTCAAATGCATTGTATATCAGTTGTGCAGACCTGAGTGTGAACAGGGCCATGGAGGATGTGACCAATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU738737 lncRNA downstream 72 77379456 ~ 77380682 (-) True G650044
TU738669 lncRNA downstream 36677 77288367 ~ 77344077 (-) False G649978
TU738670 lncRNA downstream 36677 77288367 ~ 77344077 (-) True G649978
TU738689 lncRNA downstream 168447 77211931 ~ 77212307 (-) True G649997
TU738686 lncRNA downstream 174013 77205121 ~ 77206741 (-) True G649994
TU738751 lncRNA upstream 11193 77401562 ~ 77401987 (-) True G650057
TU738745 lncRNA upstream 14553 77404922 ~ 77407043 (-) True LOC110528538
TU738752 lncRNA upstream 21023 77411392 ~ 77411620 (-) True G650058
TU738756 lncRNA upstream 24655 77415024 ~ 77415235 (-) True G650062
TU738758 lncRNA upstream 26262 77416631 ~ 77416866 (-) True G650064
XM_036984108.1 mRNA downstream 25293 77349078 ~ 77355461 (-) False LOC110528536
XM_036984109.1 mRNA downstream 25345 77349078 ~ 77355409 (-) False LOC110528536
XM_036984110.1 mRNA downstream 26438 77349632 ~ 77354316 (-) True LOC110528536
XM_021610649.2 mRNA downstream 26440 77349078 ~ 77354314 (-) False LOC110528536
XR_005052674.1 mRNA downstream 76435 77301460 ~ 77304319 (-) True LOC118965318
XM_021610655.2 mRNA upstream 14519 77404888 ~ 77463689 (-) False LOC110528538
XM_021610654.2 mRNA upstream 14519 77404888 ~ 77463817 (-) False LOC110528538
XM_036984113.1 mRNA upstream 14519 77404888 ~ 77463817 (-) False LOC110528538
XM_036984112.1 mRNA upstream 27958 77418327 ~ 77463817 (-) False LOC110528538
XM_036984122.1 mRNA upstream 82334 77472703 ~ 77527357 (-) False LOC110528539
TU738321 other downstream 364153 77013428 ~ 77016601 (-) False G649684
TU737941 other downstream 1159823 76214701 ~ 76220931 (-) False G649327
TU737942 other downstream 1165241 76214701 ~ 76215513 (-) True G649327
TU737600 other downstream 1759817 75619325 ~ 75620937 (-) False G649025
TU736097 other downstream 2272838 75106897 ~ 75107916 (-) True LOC110528488
TU739558 other upstream 638875 78029244 ~ 78029753 (-) True G650755
TU739566 other upstream 652930 78043299 ~ 78046469 (-) True G650763
TU739830 other upstream 885779 78276148 ~ 78312502 (-) True eya2
TU741554 other upstream 2063706 79454075 ~ 79455388 (-) True G652578
TU742081 other upstream 2552832 79943201 ~ 79943728 (-) True G653015

Expression Profile