RNA id: XM_036984113.1


Basic Information

Item Value
RNA id XM_036984113.1
length 4715
RNA type mRNA
GC content 0.49
exon number 16
gene id LOC110528538
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 77404888 ~ 77463817 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGCGCACATGCAGGGGCGAGCGCTCTAAGGATCATATCCTACACGCCCAGCACTGCAATGCTGCTACCTGGTAAAGGGCGAAAAAAATCTCCAACTCCAAGCTCCCCATGACAGTATTTATCCAGAATGGTCAAGAAATCCTGCACAGGCGGGGTTTACCCTGTTCCAGCTGTGGAGAAAAAGCTAAAAGTCGGCTTTGTCGGGCTAGAAGCTGGGGCTAGTACGGATTTAAACAGAGATGGGGCGCTGCTCATAGCAGGTGCCGACGCCGAGGCAACAAAGCGAGGCAGCATCCTTAGCAAACAGAGATCCAGTCTCTCTGGCAAACCGAAGCCTCCAAAGAGAAATGCATTCTACAGAAGAGTGCAGAATTTTCTTTATAATGTTTTGGAGAGACCAAGAGGATGGGCATTTATTTACCACGCATACGTTTTTGTGCTGGTCTTCTcctgtctggtcctctctgtGTTTTCCACCATTAAGGAGTATGAGAAGAGTTCTGAAGATGCCTTGTATATACTGgaaatagtcaccatcGTGGTGTTCGGCGTGGAGTACATAGTGAGGATATGGGCCGCCGGATGCTGCTGCAGATACAGAGGATGGAGGGGCCGTCTGAAATTCGCCCGCAAGCCCTTCTGCGTGATCGACGTCATGGTGCTGATTGCGTCCATCTCTGTGCTGGCGGCGGGAACCCAGGGGAACGTCTTTGCTACGTCGGCCATCCGGAGTTTGAGGTTCCTGCAGATCCTGCGCATGATCCGGATGGACCGCCGTGGAGGCACCTGGAAACTCCTGGGATCTGTCGTCTACGCTCACAGCAAGGAGCTGATCACGGCGTGGTACATCGGCTTCCTCTGCCTCATCCTGGCGTCCTTCCTGGTCTACCTGGCAGAAAAAGAGGACAACGACCAGTTTGAGACCTACGCAGACGCACTGTGGTGGGGCCTGATCACCCTGACTACCATTGGGTACGGAGACAAGTTTCCCATAACGTGGAACGGACGTCTTCTCGCCGCAACCTTCACCCTGATTGGAGTATCTTTCTTTGCACTTCCAGCAGGTATCTTGGGCTCCGGCTTCGCCTTGAAGGTCCAGGAGCAACATCGACAAAAACACTTTGAGAAGAGGCGGAATCCTGCGGCAGGACTTATTCAGGCCGGGTGGCGCTTCTACGCCACTAATCTCACCCGGCCAGACCTGGAGTCGACGTGGGATTATTATGAACGCACCGTATCCTCACCGATGTACAGACTGATCCCGCCGCTGAATCAACTGGATCTCCTGAGAAACCTGAAGAGCAAGTCGGGACTGTCATTCAGAAAGGAATCCCAACCGGAGCCCTCCCCAAGTCAGAAGGTCAGCCTGAAGGAGCGTGTGTTTTCCAGTCCCCGGAGTTCGGGGACCAAAGGGAAAGGTTCCCCCCAGGGCCCCAGTGGACAAGGCAGCCAGGGCCAGGGGGGCCAAGGTCAGGGCCAACCCATCCGCCGGTCCCCTAGTGGAGACAACAGCAACGAAGACAGCCCTAGCAAAGTGCCCAAGAGCTGGAGCTTCGGAGAGCGCAGCCGGGCGCGTCAGGCCTTCCGCATCAAGGGAGCTGCCTCGCGCCAAAATTCAGAAGAAGCCAGCCTCCCTGGTGAGGACATAGCGGACGACAATAAGAGCTGCCACTGTGAGTTTGTCCCTCAGGACTTAACTCCCGGACTCAAGGTCTCCATCAGGGCCATTTGCATTATGAGGTTCATGGTCTCCAAGAGGAAGTTCAAAGAGAGCCTGAGGCCGTACGACGTGATGGACGTCATAGAGCAGTATTCAGCCGGCCACTTGGACATGCTGGCCCGCATCAAAAACCTCCAGTCCAGGATAGATATGATTGTTGGTCCCCATGGACCCTCAACTCCACGCCATAAGAAGTATTCATCTGATGGACCCAAAGAGTCACCCAAATACTCTCCTAGAGTTGACCAGATTGTTGGTCGAGGTACTCCAATCACAGATAAAGACCGTCCCAAAGGAACCACTGACAGTGGGGTTGAAGAGGACACAAGCATGATGGGGCGCCTAGGGAAAATGGAGAAACAGGTCATGTCAATGGAAAGGAAGCTGGACTTCTTGGTGAACATCTACATCCAGCGCATGGGCATCTCCCAGTCGGAGACGGACGCCTACTTTGGGTCCAAGGAGCCCGAACCAGCACCGCCCTACCACAGCCCTGTGGACCACATGGAGAAGAGTGGCTCCATCACCAAGATCATCCGATCCAACAGCTCTATCGGACAGAAGAACTTTGACCCACCGCCATCCTGCTCCGGCCCGGGGGTCCACTGCCCACCCTCCACCTCCTGGCAGCAGCACAACGTCAGCGAGTTCCACCAGCCTAGCCAAGGCAACTTACCCTCTCCTGTAGGTGATCACTCCTTGGTCCGTATCCCTCCTCCGCCGGCCCACGAGCGCTCCTCTGGAGGCCACAACGGGAGCAATCGGGGATCCCACCGCAACagcggtggtggaggaggtggtggtggaggaggtggaggcagtggcgagggggatagagagggcaAGCCAGACAGCGACACGTCCATCTCTATCCCCTCAGTGGACCACGAGGAGCTGGAGCGCTCCTTCAGTGGCTTCAGCATCTCCCAGTCCAAGGAGAACCTGGACTTCCTGAACAACAGCTATTTCAGTGGCGTAGCCCGCTGCGCCAAGGTAAGGCCCTACATCGCAGAAGGTGAGTCCGACACTGACTCCGACCTCTGCGCCCCCTCACCCAACTCGGCCACCGGGGAAGGCGCTTACGGGGACCGAGGGTGGTCAGGATCCAAGTAGGCCAAAATTGGAACCTCGTATAAATGGGGCCATGGTGACTCTGCCTTGGAGTTCAGAGCTGAGAGGCCGATATGCTGGGTGTGAGCCTGCTGCTACCACCAATGGTACATGTGAGAGCAGAGTCATCCAGCTCCTCTTAAATGACTGCAACGTAGAGTGAGAGAAAAGGTTTATCAGACCACACTCCAGCAGTTTTACTGAGAAAGCGCCTGTAGTTTTTCATACTCGGAAGGTTTGCAGCAACTTGACTTACAGCACACACATTTGTTCTCATGTATTCACACACTCATCAAGGTTAAGTTTGccagtgatttaaaaaaatatctgacCCTGGAATGGAATGCAGATTAATTGCCAACCTTCTATATTATGATTGAGATGGTTAAAGAGTTATCACACAGAAGAAACAGGTCCAGTGtggctcagctggtagagcaCAGCACTTGCtgtgccagggttgtgggttcaattcccacagggcATCAATACGAACGAACGtggaaatgtatgcactcactattgTATGTTGCTCTAGATAAGAGTGTCTCCTAAATGACAAAaataattatataaaatatacttgAATTTGATCTAAATTATGACATTCATGTTCTTTTGCTGTATCTCTTTGTTTTTGATACGTGGCACAAGAGATTCCCAATGAATCTAAAATGTATTGTATTTCTATCCCAAATGACTTATTATTTACAGTGGACAACAGAGGACATGTTTTGCATTATGGTTGATCAACTAAACACATATATTTCAAAGGAATGTAATATTATCAGCATTATGGCTCGTGTCCATAAGTCCTATGGGATAAAGGGACGTGATAACcagttctatgtgcactattctGTTGTGGTTGTTGTACAAAAACACGGATGGTATTTACATCACACTACTTACTAAAGATATTGTACATATTCTATTCAATACCCACAATATTGCATTTGTGATATCCACAAAGATGCTTTCTATGGGTAGAGGTACATTTGGTTTAGTCTTTATATGATCTGTAAAGATGTATTTTATTGATTTGTATATATCAAATCATTtagatgtgtttatttatttcctGTAAGAATTATAGAAGCAACTTAGGCACAAATGCCTTGCATTTGCCTTGCACAGCTTTTAATTTTGATTAATTTTTGCTAAAAAAAGTTTTTCTAAGAATCAATTATTCAAATGCACTAACACTTAACAGCTAGATCAATGACATGATACTCAACTGAAAACATTAACATACTTCACTAATGTAAAATTACAACAGCTATAGTTAGATGGAAGGTTTGATATTTTGTTGGTATAAAATATAATTTCAAGATGATAAAAATTGTAATGAAATATTCAGGCAGGCCTGCCTCACTTCCCACTGAGGAACACAGGACAGACGTCACACTGCTTCACACAGGACAGACGTCACACTGCTGGACACAGAACAAGCTTCCCACTGCTGAATAGAGGACAGGCTGATGAACACAGGAGAGGCTTCATTCACACTGCTGAACACAAGACAGGCTTCCCACTGCTGAACACAAGACAGGCTTCCTTCCCAATGCTGCACAGGACAGGCTTCTCACTGCTGAACACACTTTGACATGATATTTCATGTGAGCCAACATGGGGACATTCAACAAACTGTGTTATCCTTTGAAAAGGCCATTAATGCTGCAATAATTTGGGTAATTATGTTTCAAATGgatttgttgtgtaatgtttcaTTGTTGTATTTTCAAAGGAAAAATCATGTACGGacgtacactaccggtcaaaagttttggaacacctactcattcaaggtttaaaaatacaaactattttctacattgtagaacaatagtaaAGACataacaactatgaaataacacacatgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU738751 lncRNA downstream 2901 77401562 ~ 77401987 (-) True G650057
TU738737 lncRNA downstream 24206 77379456 ~ 77380682 (-) True G650044
TU738669 lncRNA downstream 60811 77288367 ~ 77344077 (-) False G649978
TU738670 lncRNA downstream 60811 77288367 ~ 77344077 (-) True G649978
TU738689 lncRNA downstream 192581 77211931 ~ 77212307 (-) True G649997
TU738862 lncRNA upstream 7604 77471421 ~ 77471646 (-) True G650139
TU738847 lncRNA upstream 8891 77472708 ~ 77474248 (-) True LOC110528539
TU739258 lncRNA upstream 149766 77613583 ~ 77614091 (-) True G650464
TU739425 lncRNA upstream 408867 77872684 ~ 77940768 (-) True G650626
TU739440 lncRNA upstream 448232 77912049 ~ 77913303 (-) True G650640
XM_036984458.1 mRNA downstream 14519 77380754 ~ 77390369 (-) False LOC110529034
XM_036984108.1 mRNA downstream 49427 77349078 ~ 77355461 (-) False LOC110528536
XM_036984109.1 mRNA downstream 49479 77349078 ~ 77355409 (-) False LOC110528536
XM_036984110.1 mRNA downstream 50572 77349632 ~ 77354316 (-) True LOC110528536
XM_021610649.2 mRNA downstream 50574 77349078 ~ 77354314 (-) False LOC110528536
XM_036984122.1 mRNA upstream 8886 77472703 ~ 77527357 (-) False LOC110528539
XM_036984123.1 mRNA upstream 8886 77472703 ~ 77527358 (-) False LOC110528539
XM_036984121.1 mRNA upstream 8886 77472703 ~ 77527359 (-) False LOC110528539
XM_036984115.1 mRNA upstream 8886 77472703 ~ 77527360 (-) False LOC110528539
XM_036984124.1 mRNA upstream 8886 77472703 ~ 77527360 (-) False LOC110528539
TU738738 other downstream 21952 77382667 ~ 77382936 (-) True LOC110529034
TU738321 other downstream 388287 77013428 ~ 77016601 (-) False G649684
TU737941 other downstream 1183957 76214701 ~ 76220931 (-) False G649327
TU737942 other downstream 1189375 76214701 ~ 76215513 (-) True G649327
TU737600 other downstream 1783951 75619325 ~ 75620937 (-) False G649025
TU739558 other upstream 565427 78029244 ~ 78029753 (-) True G650755
TU739566 other upstream 579482 78043299 ~ 78046469 (-) True G650763
TU739830 other upstream 812331 78276148 ~ 78312502 (-) True eya2
TU741554 other upstream 1990258 79454075 ~ 79455388 (-) True G652578
TU742081 other upstream 2479384 79943201 ~ 79943728 (-) True G653015

Expression Profile