RNA id: XM_036984112.1


Basic Information

Item Value
RNA id XM_036984112.1
length 2679
RNA type mRNA
GC content 0.50
exon number 12
gene id LOC110528538
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 77404888 ~ 77463817 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGCGCACATGCAGGGGCGAGCGCTCTAAGGATCATATCCTACACGCCCAGCACTGCAATGCTGCTACCTGGTAAAGGGCGAAAAAAATCTCCAACTCCAAGCTCCCCATGACAGTATTTATCCAGAATGGTCAAGAAATCCTGCACAGGCGGGGTTTACCCTGTTCCAGCTGTGGAGAAAAAGCTAAAAGTCGGCTTTGTCGGGCTAGAAGCTGGGGCTAGTACGGATTTAAACAGAGATGGGGCGCTGCTCATAGCAGGTGCCGACGCCGAGGCAACAAAGCGAGGCAGCATCCTTAGCAAACAGAGATCCAGTCTCTCTGGCAAACCGAAGCCTCCAAAGAGAAATGCATTCTACAGAAGAGTGCAGAATTTTCTTTATAATGTTTTGGAGAGACCAAGAGGATGGGCATTTATTTACCACGCATACGTTTTTGTGCTGGTCTTCTcctgtctggtcctctctgtGTTTTCCACCATTAAGGAGTATGAGAAGAGTTCTGAAGATGCCTTGTATATACTGgaaatagtcaccatcGTGGTGTTCGGCGTGGAGTACATAGTGAGGATATGGGCCGCCGGATGCTGCTGCAGATACAGAGGATGGAGGGGCCGTCTGAAATTCGCCCGCAAGCCCTTCTGCGTGATCGACGTCATGGTGCTGATTGCGTCCATCTCTGTGCTGGCGGCGGGAACCCAGGGGAACGTCTTTGCTACGTCGGCCATCCGGAGTTTGAGGTTCCTGCAGATCCTGCGCATGATCCGGATGGACCGCCGTGGAGGCACCTGGAAACTCCTGGGATCTGTCGTCTACGCTCACAGCAAGGAGCTGATCACGGCGTGGTACATCGGCTTCCTCTGCCTCATCCTGGCGTCCTTCCTGGTCTACCTGGCAGAAAAAGAGGACAACGACCAGTTTGAGACCTACGCAGACGCACTGTGGTGGGGCCTGATCACCCTGACTACCATTGGGTACGGAGACAAGTTTCCCATAACGTGGAACGGACGTCTTCTCGCCGCAACCTTCACCCTGATTGGAGTATCTTTCTTTGCACTTCCAGCAGGTATCTTGGGCTCCGGCTTCGCCTTGAAGGTCCAGGAGCAACATCGACAAAAACACTTTGAGAAGAGGCGGAATCCTGCGGCAGGACTTATTCAGGCCGGGTGGCGCTTCTACGCCACTAATCTCACCCGGCCAGACCTGGAGTCGACGTGGGATTATTATGAACGCACCGTATCCTCACCGATGTACAGTAGACTGATCCCGCCGCTGAATCAACTGGATCTCCTGAGAAACCTGAAGAGCAAGTCGGGACTGTCATTCAGAAAGGAATCCCAACCGGAGCCCTCCCCAAGTCAGAAGGTCAGCCTGAAGGAGCGTGTGTTTTCCAGTCCCCGGAGTTCGGGGACCAAAGGGAAAGGTTCCCCCCAGGGCCCCAGTGGACAAGGCAGCCAGGGCCAGGGGGGCCAAGGTCAGGGCCAACCCATCCGCCGGTCCCCTAGTGGAGACAACAGCAACGAAGACAGCCCTAGCAAAGTGCCCAAGAGCTGGAGCTTCGGAGAGCGCAGCCGGGCGCGTCAGGCCTTCCGCATCAAGGGAGCTGCCTCGCGCCAAAATTCAGAAGTGCTGATTGAGATGCAGGATGAAGAATTCAGACAGAAGAGCTCCCCAGGTCAGGCAAATGGAGAGGGTTGTTACACCACCCATGATCAACACACCGATAAGCAAATATAGAGGGACTCATTGCCTAATGTACACAAGAGCTCATGTTGCAATCATATTTAGTTTTTGGTTTGGTATGCTTTTTGGGCTGGTTCCCCAGACACAGAAGCCTAGTTCTGGACAAAAAAGTACGCTCAATGGAAAGGATCCCCCCAGGGCCCCCAGTGGACAAGGCAGCCAGGGCCCCCAGTGGACAAGGCAGCCAGGGCCCCCAGTGGACAAGGCAGCCAGGGCCCCCAGTGGACAAGGCAGCCAGGGCCCCCAGTGGACAAGGCAGCCAGGGCCAGAGGGGCCAAGGTCAGGGCCAACCCATCCGAAAGTTGAAAGTGTTTTTAAATCCAGAacaaggcttaatctgtgtctgagaAACCAGCCCTTCATCTTTGTTCCATTTTGTAAATAGCTGTAAAGAGGTAAACATGCTGTATAGTGTAAGATAACATGGATTTATTTTTCCTGGCAATGGCATCACCTTCATGTTTGCTGTTTGATTGACTTTTGTTTTCATCATTAAACATCATAAAACCATGTATTTTGAATACTAATGAGATGCCTGCTTGAGTTTCTTGTCCAAATCCTCCCAAGGTGTCAAATTGATTGTGTAGCTTAATGAAGTAACTTtaagatgatttggacatgaaatCGGCCCAAATCTGATTTCACACATCAGTTATAGTGATCAACCAGATCTAAATCTGTCAAAATTAGACAATATTTAATAtacattttatatacattttGGTTAAAACTATTTACTAAAGTAATTCTATGGAGTAAAATTAGTGTGCATATCAGTCTCTCATTGATTAGTCTCATGCCATTAGATTATAAATGTGGCCAAATTATTGGTCTCAATTGCAGCAATCAATTAATAGCATGCTTAAGAGAGCATATTAAACCCAGTAACAAGCTATAACAATCTATGTCAGTTTATGATGATGACTGTTACCGACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU738758 lncRNA downstream 1461 77416631 ~ 77416866 (-) True G650064
TU738756 lncRNA downstream 3092 77415024 ~ 77415235 (-) True G650062
TU738752 lncRNA downstream 6707 77411392 ~ 77411620 (-) True G650058
TU738745 lncRNA downstream 11284 77404922 ~ 77407043 (-) True LOC110528538
TU738751 lncRNA downstream 16340 77401562 ~ 77401987 (-) True G650057
TU738862 lncRNA upstream 7604 77471421 ~ 77471646 (-) True G650139
TU738847 lncRNA upstream 8891 77472708 ~ 77474248 (-) True LOC110528539
TU739258 lncRNA upstream 149766 77613583 ~ 77614091 (-) True G650464
TU739425 lncRNA upstream 408867 77872684 ~ 77940768 (-) True G650626
TU739440 lncRNA upstream 448232 77912049 ~ 77913303 (-) True G650640
XM_036984458.1 mRNA downstream 27958 77380754 ~ 77390369 (-) False LOC110529034
XM_036984108.1 mRNA downstream 62866 77349078 ~ 77355461 (-) False LOC110528536
XM_036984109.1 mRNA downstream 62918 77349078 ~ 77355409 (-) False LOC110528536
XM_036984110.1 mRNA downstream 64011 77349632 ~ 77354316 (-) True LOC110528536
XM_021610649.2 mRNA downstream 64013 77349078 ~ 77354314 (-) False LOC110528536
XM_036984122.1 mRNA upstream 8886 77472703 ~ 77527357 (-) False LOC110528539
XM_036984123.1 mRNA upstream 8886 77472703 ~ 77527358 (-) False LOC110528539
XM_036984121.1 mRNA upstream 8886 77472703 ~ 77527359 (-) False LOC110528539
XM_036984115.1 mRNA upstream 8886 77472703 ~ 77527360 (-) False LOC110528539
XM_036984124.1 mRNA upstream 8886 77472703 ~ 77527360 (-) False LOC110528539
TU738738 other downstream 35391 77382667 ~ 77382936 (-) True LOC110529034
TU738321 other downstream 401726 77013428 ~ 77016601 (-) False G649684
TU737941 other downstream 1197396 76214701 ~ 76220931 (-) False G649327
TU737942 other downstream 1202814 76214701 ~ 76215513 (-) True G649327
TU737600 other downstream 1797390 75619325 ~ 75620937 (-) False G649025
TU739558 other upstream 565427 78029244 ~ 78029753 (-) True G650755
TU739566 other upstream 579482 78043299 ~ 78046469 (-) True G650763
TU739830 other upstream 812331 78276148 ~ 78312502 (-) True eya2
TU741554 other upstream 1990258 79454075 ~ 79455388 (-) True G652578
TU742081 other upstream 2479384 79943201 ~ 79943728 (-) True G653015

Expression Profile