RNA id: XM_036984116.1


Basic Information

Item Value
RNA id XM_036984116.1
length 7881
RNA type mRNA
GC content 0.51
exon number 33
gene id LOC110528539
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 77472703 ~ 77527363 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTAAAATATTGTGCATATTCTGAGAAGTATATTTTATTATTCCAACAACCTTCCCTTTCCCGCCGGCTTTTTTTAAAGTCATGAGATGTGTGACCGACACAGTTCAGTGGTCAGGCTAGCCGTCAGCTGGATGACGTCGGTGCAAATGTAGCTATGCTTGTCACTGGATGTTGATTTACTTCAAATATGGTTCTGCTATATCGTCGTTTGTACTGTAAAGTTTGCTGAGAATACGGACGGTTGATATGACAGTCTTTCCCTCTGACACAGGTAGCAATCCGACCCAGTAGAAGCAAAGGCCATCACCATGTACTCGGAGTGGAGGTCTCTGCACCTGGTGGTGCAGAGCGACCAGGGCCACCTGAGTGTCCTTCACTCGTACCCTCCGGCAGTTGGGCGCGATGTGGCCAATGCAGTGGTTAAACCCCTGGGGGTGACCCTGGGCACTCCGTCCACTGACAGCCTGCTCAAGACCGACAAAGAGGTGAAATGGACGATGGAGGTGCTGTGCTACGGCCTGACTCTGCCCCTGGACGGGGACACGGTCAAGCTGTGCGTGGACGTCTACACTGACTGGATCATGGCGCTGATCACTCCTCGCGACTCCATCCCCCAGCCCATCGTCAAGGAGCCCAACCTCTACGTGCAGACCATCCTCAAACACCTCTACAACCTCTTCATGCCCAGgcCGGAGCACTACAGCCCCATGCACTTCCGCTTGTGCCAACAGGTGCTGACGGCAGTGTTGAAGCTGGCCAGGGAGTCGGGCAGCGGCATGGCCCGGGAGACCTGGGAGGTGTTGCTGCTATTCCTGCTGCGCATCAATGACACTCTGCTAGCCCCGCCCACTGTTGGAGGTGGGATTGCGGAGAAGCTGGCTGAGAAGCTGATCAGCGTTCTGTTTGAGGTGTGGTTCATGGCCTGCACACGCTGCTTCCCCACACCGCCCTACTGGAAGACGGCCAGGGAGATGCTGGCCAACTGGAGGCACCACCCGCCCGTGGTGGAGCAGTGGAGCAAGGTCATCGCTGCTCTCACTTCCAGACTGTTACGGTTCACCTACGGTCCGTCCTTCCCTCCGTTCAAAGTCCTAGAGGAGGACGCCAACCTCATCCCTATTGAGATGGACAACGACTGTGTGGCTCAGACCTGGTTCCGCTTTCTGCACATGCTGAGTAACCCGGTGGACCTCAGCAGCCCTTTGACGGTCAGCTCCACGCCAAAATTCCAGGAGCAGCTGCTGGGGGTGACCGGCGTGCCCCAGGAGGTGATCCAGCATCACCCCTGCCTCAAGCAGCTGCCCCAGATCTTTTTCAGGGCCATGAGGGGGGTCAGTTGCCTGGTGGATGCCTTCCTGGGTGTCGGGGTCGCAAAGAGAGAGATTCGAGAGAAACTGCCCTCTTATGTTTCTTCTTCTTCCCCAGAAACAGCACTAGTGTCTCTCTCCCCGTCAGGAGTGACAGTTTCTCCTAGGAGCAATATACGTGACAGACTTCCCTCTCTAGGTGCCGCCGTGTCTAGGAACAATTTCCGAGAAAGGCTTCATTCCATTCCCTCATATGgtATCTCCCGCCCCCGGTCGGACAGTGCCCCACCCACccctgtcaacagactgagcgtACCGCCGcctcccaccaccaccaacaccacgcCCCCTCACAGCCGCCGCAACAAACCCACGGGGGTCATCAAGACGGCCAGTAAAACCTCCACAGCGAGCATGACGCACCAACCCAAAGTGTCCTACCAGccgtcctccacctctcccttgtCCAGCCCCAACCTGACCAGCACTGAGCCCCGGCCACTGCCCGCCCCCACCAGGCCCAAGGTCAACAGTGTCCTCAATCTGTTTGGCCAGTGGCTGTTTGACGCCGCGCTGGTGCACTGCAAGCTCCACACGGGCCTGAGCCGAGACAACAGCTTGACTGCCCTGGCCACTCAGGCAGGCGTGGAGCCGAGGAGGCAGGGATCCCTGATGTCCACAGACACCATGGTGTCCAACCCCATGTTCGATGCCAACGAGTTCCCCGACAACTATGAGTCGGGCCGGGCCGAGGCCTGTGGAACCCTCTGCAGGATCTTCTGCAGCAAGAAGACCGGCGAGGAGATCCTCCCCATTTACCTGTCCAGattcTACATGGTTCTGATTCAGGGCCTCCAGATCTCTGACTACATCTGCCGACCGGTCCTGGCCAGCATCATCCTCAACTCTTCTGCCCTCTTCTGCTCCGACCTGAAGGGCATCAACGTGGTGGTCCCCTACTTCATTTCTGCTCTGGAGAACATCCTCCCTGACCGAGAGCTGTCAAAGTTTAAGACCTATGTGAACCCCACAGACCTGAGGAGAGCCTCCATCAACATCCTGATGTCCATGCTGCCTCTGCCACACCACTTTGGCAACGTCAAGTCAGAGGTGCTCTTGGAGGGCAAGTTCAGCAATGACGACAACTCTCTGCACGACAAGGCTGTCTCCTTCGTCTCCCTCAAGCTGCGATTGGTCAACATCCTAATAGGAGCGCTCCAGACGGAGACGGACCCCACCAACACACAGATGATCCTGGGTGCAATGCTCAACATTGTCCAAGACTCTGCTCTCCTGGAGTCCACTGGTGCCCAAGCAGAGGGCATTGTGGATGGCAGCAATGCACTGGCCAAGAGCCACAGCAGGAACAACAGTGGCATCAGCAACACCAGCGGGGGCAGCTCTGAAGCCACCAcccctgacagagagaggcccACCCAGGCCCTCCTCCGAGACTACGCTCTCCATACAGATGCAGCGGCCGGCTTGCTGATCCGCAGCATCCACCTTGTCACCCAGAGGCTCAACTCCCAGTGGAGGCCTGACATGAGTATCTCCCTGGCCGCTCTGGAGCTGCTGGCCGGCCTTGCCAAGgtGAGGACGAGTGTGGAGTCTGCAGACCGTAAACGTGCGGTCAGCTCGGTGTGTGGTTACATCGTGTACCAGTGCAGCCGGCCTGCCCCCCTCCACTCCAGAGACCTCCACTCTATGATCGTGGCAGCcttccagtgtctgtgtgtgtggctgacagAACACCCTGACATGCTCAATGAAAAGGACTGTTTGATAGAGGTCCTGGAGATCGTGGAACTGGGCATATCGGGCAGCAAGTCCAAGACGGGTGACCAGGAAGTGCGTTACAAAGGGGACAAGGAGCACAACCCGGCCTCCATGAGGGTGAAGGATGCTGCTGAGGCCACCCTGTCATGTATAATGCAAGTCCTGGGGGCGTTCCCGTCGCCTAGTGGCCCCGCCTCCCCCTGCAGCCTACTGAACGAGGACACCCTGATCAAGTACTCCAGGCTGACCTCCACCAGTCACAAGAACTTCCGCTACTTTGTCCTGGACAACTCTGTCATCCTGGCCATGCTAGAGCAGCCGCTGGGCAACGAACAGACAGATCCCTGTCCGTCCGTGACCATGTTGATCAGGGGGATGTCCGGGAGACACGCCTGGACCATGCAGCTCTTCCATCAGCCCAGGGAGGCCCGCGCCAGCCACAAGcAGGTGTTTGTCCCAGAGAGCCGGCCCACTCCCAAAAATGATGTGGGGATCCGGTTCAACGTCAAACACAGACCCTTCCCTGAAGAAGTGGACAAAATTCCATTTGTGAAAGCGGACCTAAGCATTCCAGACCTGCATGATATTGTAGATGAGGAGCTGGAGATGCAGCACAACAAGCTGTGTGGTGTGATGGCCAAGCAGACTGAGTATGAAACAACACTGGAGCACAGCAGCGAGGAGCGCTGGTGCAACAAGAGCTTCCCAGACCCGCTGACGGACTGCAAGCCCCCACCGCCCTCTCAAGAGTTCCAGACCGCCCGCCTTTTCCTGTCGCACTTTGGCTTCCTGTCTCTGGAGGCTCTCAAGGAGCCCGGCAACAGTCGCCTACCTCCCCACCTGATTGCACTGGACTCTGGGTTGCCTGGCTTCTTTGATGACATGAGCTACCTGGACCTGCTGCCCTGCCGGCCCTGTGATACAGTCTTCCTCTTCTACATGAAGGCTGGCCAGAAGAGCAGTCAGGAGATCCTGAGGAACGTGGAGTCTAGCTCCAACGTGCAGCACCACTTCCTGGAGTTCCTGCTGTCGCTGGGCTGGCCCGTGGAGGTGGGGCAGCACCCGGGCTGGACAGGCAGTGTCTACACCAGCTGGTCCATCaacaagaacaacaacaataCCGTAGACAGCAACCCACCAGATGACATGGTCGCCCTGGGAGACACGGGTGGGGGCGTGTTCAACGGAGAGAAGCGGGTGCTGTACTATGCAGACGCCTTGACCGAAATTGCCTTCGTCGTTCCCTCGCTCACAGAGTCCACCGCGGAGTCGTCAGAGAACAGTTTCCCTACGGGAGAGCCAGACTCTCAGATGGACCTGCTGCCCAGCCTGCTGAAACAGTCCAACCTCACACTGGACCTCTTCCCCAACCACTCTGACAACGTGGCCCCTGGGCAGAGGAGTCCCACGGTGAAGTCTAAGAAGATGCCTCCTGGCAGGACCATCCCTCCAATGGGCCCCGAGACCAAAGTACTGGTGGTCTGGGTGGAGCGCTACGACGATATCGATAACTTTCCTCTGGTTGACCTGCTGGTAGAGACGAGCACTGGAGTGGAGACCACGACCAACAGTAGCACATCCACAAGGCCCACGTCATCAGGTCAGGATTTGCAGGTGATCTTCATCCACCCTCTGAGGACTGGCCTGTTCCGGATCCGCCTGCACGGGGCCCTGGGCAAGTTCAGCATGGTCGTCCCCCTGGTGGACGGCATGGTGGTCAGCAGAAGGTCactagGGTTCCTGGTGAGACAGACGGTGATCAACGCGTGCCGACGGAAGCGGCTGGAGAGTGACTCGTACAACCCGCCGCACGTGCGTCGGAAACAGAAGATCGCTGAGGTGGTGAACCGCTACCGCAACAAGCAGCTGGAGCCAGAgttctacacctctctcttccAGGAGGTAGAGGAGCGCAGCCTCAACCGGTGAACTTTCACCTTTCACCTCACTcccccacacagagagagactgacacaaGGACTGCAAAGATTCTATataacaaatgtattttttttgttatgtATATTATGAGCAAGTTGCGATTCAAATTGAGGtcaacaatttatttttatttctatgcTGACTCACCGCAGCCACGGCACCTGACCATCTTCGTTTTTCCCACCCCGCGCCACTACACTGCTTATTTGCCACTTACTGTATTTCTGTCTAGacttcacaggaggttggtggcaccttaattggggaggacgagctcgtggtaatgactggagcggaataggtggaatggtatcataaatatcaaacacatggtttccaggtgtttgaagCCATTCCATTTGCACCGTTTCAGCCGTTGTtgtgagccatcctcccctcagcagcctccactgctagaCTCACAACAAATTGTAGGACTCTTTGATGGGTTGTGGTTGGGGCACTCACCTCACCTGGCTGCGAGGCTTCAGACTGTCAGCAGAGGGAACATACTCAGTGACTTTAGACTTGTGACGTGGCAAAGAGATTGCCGTCGGCACTCAAAATGGCTTCCACTCTATGGCTGTTACCAGTTCCCACAGCCGTATCACTGTGGTTTTTGAAGTCCAGTTCTGTTTGCTTTTCTATGAAACGCATTGGTCTTTGTATTTTACCATATCTAACGTcgtgtttgttgttgttatgttggtCTGGAGCGAAATAGACCGGTCAAAACATCAGAAAAATGTACTTTTATCTAAAAAAAAggacattacattttttatttacagaACTCAAATCTCACTTCAGTCAATGGTCATTTTTGACTTACCTAGTGATTTGGGTTTTCTCTTCCCACATGCACACTTGTGCCAGTTAGAGAGTGTGGAAATGTACTTGTACTTAAAATCTCAGGTAGATTGAGCCTTTTTATACTCATCGGCATCTGGGTTGTGTTCATAAGCTACAAAACAGGCGAACTAAACGAACTGAATGAAAAGGGAGGGCCAACCAGAACTTCCAATCAGTCCAATGAGAAACGTTTGTTTTGTTTTCCGTTGTACAGTGTTTTGCTACGATGTGCCCTAATGAATGCGACCGTGGTCCTTGTACTCAATGCACTCCCAACCAACTGACCTCGTTTTAGGCATTATTCACTTTTAAACCTGTGGCATTTCACATTCACTGCATCTGATGGTAGAattcaggatatatatatatatatatattggtttggataaaaaaaacattaactTGGTTTTTCTTTCcatatcaaataaaaaatatatgaaaaatacattttgattggtGATATTAAGGGTGAGTTTCACTTTGATAGACACAGTTGGAAAAATAATCGTCTTTggtgatttaaaaaatgatttgtcATGAGTACTGTGTTTAACATCCCATTCCAGATGTGACATCACAGACTAGAGAACCTGATACATACCGCCATGTTGTGTCCATAATATTTTTGTTTTATGTCCAGCCTAAAACCAAATTCAGACCATTAAATCACTAGTGTGTAGTGGCAGAGGATGTACTTCTTTTTTTTCCACCAATTAGTGTCTTTATTTGTGCTTGATTTTATTCCAGACAACATAACAGGGCTGAAACACAGTAGTTTTATGTAGCCATTTAAAAAATGATCTATTAAGGGTTGGATGGCTACTACTGGCGTCCTGTATGTAACTGGGTCTGTCTAAAACACAGATTTTATACGTTattattcttcttttttttacaatATGGAAAATAATCCGGAACTATATTTCTTTTGCATGATATTTTCCATGGTGATCCACCCAAGCCATTTATACTTTTGCATGATATTTTCCATGGTGATCCACCCAAGCCATTTATACTTTTGCATGATATTTTCCATGGTGATCCACCCAAGCCATTTATACTTTTGCATGATATTTTCCATGGTGATCCACCCAAGCCATTTATACTTTTGCATGATATTTTCCATGGTGATCCACCCAAGCCATTTATATTTTTGCATGATATTTTCCATGGTGATCCACCCAAGCCATTTATATTTTCAGGAAATAAGATTTCCTCCACTTTCGTTCCATAGATTGGTAATTTTGTGTTTAATTTTGGAATGATTTCCATTTTCTTGACTGTTAAGGAAAAGATTAATTGTACTAAACTATTGAAACCTTACTGTATCTGGGGAAGCTAAAGGCTCACTTGAGTTATTTATATTTCTCCAGAATAATATTACTGTCATTTCCGGTTACTTGCTTATTGGCAATTGACAAGTCCTGTGTTTGAGGATCAATAATGCAGTAAAATgttagtctggtcccagatctgtttgtgctgtatagccaactcctatggttgTTAGCAACTTCAAGAGTTGTGCTTTCTAGCACAACCTGATCTGTGACCAGGCCAGTAAAATGTCACTTCAGGCATGACTTTTGCTGTCAATTTACTAGTGTTAACTGTTTTGAATATGGAATGTCTAACCTATTGCTGATTTTCAAATGGCCTCAATGAATTTAAATTCTCAATTGAATTGATACTCTAGCCTGCCATTGTGCTCTGCAAATATTCTACAATCTCGATGGTGCCACGTGAATTGAATTAGATTTTTATCCCGTTCCTCAGAAACCACTCATTTATTCTGTAAATGTTGAAGGTATCAACTTGTATGAAGTTGGAAGATGTGTACATACTGAGGGTGTGAAAGTATATTTTGTTCATCTGTTCCTCCGTTAGGAAAGGCACAAAATCTGCTTGTTTGTATTGGTCTTATTATGTGCGTGTCGAAAAACAAACTCATTGGATATTGAATGTAACGCAATGTAACAAATAAAGATTTTGATTCACTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU738862 lncRNA downstream 1057 77471421 ~ 77471646 (-) True G650139
TU738779 lncRNA downstream 9708 77462756 ~ 77462995 (-) True G650085
TU738774 lncRNA downstream 17247 77454841 ~ 77455456 (-) True G650080
TU738767 lncRNA downstream 40372 77431848 ~ 77432331 (-) True G650073
TU738761 lncRNA downstream 47160 77425308 ~ 77425543 (-) True G650067
TU739258 lncRNA upstream 86221 77613583 ~ 77614091 (-) True G650464
TU739425 lncRNA upstream 345322 77872684 ~ 77940768 (-) True G650626
TU739440 lncRNA upstream 384687 77912049 ~ 77913303 (-) True G650640
TU739443 lncRNA upstream 388545 77915907 ~ 77916161 (-) True G650643
TU739474 lncRNA upstream 430535 77957897 ~ 77958109 (-) True G650673
XM_021610654.2 mRNA downstream 8886 77404888 ~ 77463817 (-) False LOC110528538
XM_036984113.1 mRNA downstream 8886 77404888 ~ 77463817 (-) False LOC110528538
XM_036984112.1 mRNA downstream 8886 77418327 ~ 77463817 (-) False LOC110528538
XM_021610655.2 mRNA downstream 9014 77404888 ~ 77463689 (-) False LOC110528538
XM_036984458.1 mRNA downstream 82334 77380754 ~ 77390369 (-) False LOC110529034
XM_021610658.2 mRNA upstream 347250 77874612 ~ 77948295 (-) True LOC110528541
XM_036984132.1 mRNA upstream 548147 78075509 ~ 78130469 (-) False necab3
XM_036984133.1 mRNA upstream 548147 78075509 ~ 78130470 (-) True necab3
XM_036984140.1 mRNA upstream 728229 78255591 ~ 78312601 (-) False eya2
XM_036984142.1 mRNA upstream 728229 78255591 ~ 78312601 (-) False eya2
TU738738 other downstream 89767 77382667 ~ 77382936 (-) True LOC110529034
TU738321 other downstream 456102 77013428 ~ 77016601 (-) False G649684
TU737941 other downstream 1251772 76214701 ~ 76220931 (-) False G649327
TU737942 other downstream 1257190 76214701 ~ 76215513 (-) True G649327
TU737600 other downstream 1851766 75619325 ~ 75620937 (-) False G649025
TU739558 other upstream 501882 78029244 ~ 78029753 (-) True G650755
TU739566 other upstream 515937 78043299 ~ 78046469 (-) True G650763
TU739830 other upstream 748786 78276148 ~ 78312502 (-) True eya2
TU741554 other upstream 1926713 79454075 ~ 79455388 (-) True G652578
TU742081 other upstream 2415839 79943201 ~ 79943728 (-) True G653015

Expression Profile