RNA id: XM_021610658.2


Basic Information

Item Value
RNA id XM_021610658.2
length 2402
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110528541
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 77874612 ~ 77948295 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAAAACATCTTGGAATAGGAGAGGGAGTTGGAGGAGGGGGCTGGGTCTCCTGCCTTACCCCTATCTCTTTACACGACTGCCAACCCGTCTATAGAGTTATTCCAGGAATGTGTTGAACATGGCTGCCGCGATGAAGGCACAGAAAACTGGACTGTTGGAACTTCGAGTTACCGTGGACCGTTGGATCCGTGTATTAGCCACACTTACGGAGGAGACTTTAACCGTGAGCCCCGGAGAGGTCGCCGAAGAACCAGTGAAACCCAACCCAACTCCCGCCGGTGACATTAATGGAGACCCAGCCAACCTCAGCTCCTTTCCCGTCCCAGAAACGATCACCAACGTTAAGCGCACGGTGAGAGTTACAAAGCAAGATGTGGGAGGACTTGGAATTAGTATTAAAGGTGGGAAAGAGAATAAAATGCCTATTCTCATCTCGAAGATCTTCAAAGGGTTGGCTGCTGACCAGACGGAGGCCCTGTACGTGGGTGACGCCATCCTTTCGGTCAACGGCTCTGACCTCCGGGAGGCCACACACGATGATGCCGTGCAGGCTCTAAAGAAGACGGGCAAGGAGGTCATCCTAGAGGTGAAATACATCAAGGAGATGTCAGCCTTCTTTAAGAACACCTTGCCCGGTGCACCCCTACCCTGGGACTCCCCCCATGCCACGCCACAGAAGGGCGCAGACGCCCCCCCTACCGAGCTGAAGGAGGCCAGGACCATCCCCCTGAAAATGTGCCAGGTGACCAGGAAGCAGTGCCCCCCGGACACAGAGAACAGGTACTTTGAGGTGATCTCGTCCAGCAGAAAGAGCTCGGTGTTCCTGAGGGCCAAGGACCCTGCCATGGCCCAGTCCTGGTATAACGCCATCCAAGCCGGGGTTTCGGCCCTGGTGCCCCGAGTCAGGGATGAGCTGAGGGCCATGCAGGCGGGCCTGGAGGTCAAACACATGGGATGGATCACTGAGCAGgCGACCCAGGGTCCAGAGAGACCGGTGCTGGCTCTGCTGACTGAGAGAGACCTGCTGCTGTACCCCACCCTTCCTGACAGTAAAGACGGCATCAACAGCCCAGCCAAGAGCCACCCGCTCATCACAACTAGACTGGTCCACTCAGGACCGGGGAAAAGCTCTCCCCTGCTGGACTCGGAGCTCTCCTTTGGGCTGCGCACCGGCACCAAGCAGGGCGTGGAGACCCACTTGTTCCGGGTGGACTCGGCCAAGGAGCTTTCGGCCTGGACCCACATGCTGGTGGACGGCTGCCACAACGCCGCCGAGCTCATCCAGGAGGTCACCACAGCCTGCAGCTGGAACGGGAAGGAGTGCAACCTGGGAGTGCACATCGACGAGGGCTTTAGCCTTTTCACTGAGGAGATGGGCATCAGAAAAACGGTGCTCCTCCAGCAACCCTTCGAGCGTCTGCGCATGTCCTCCGATGACGGTGTACACATGATCTTCCTTGACTTTGGAGGGCCAGAGGCGGAGATTCAACTGGACCTCCACTCCTGCCCCAAGACCATGGTGTTCATCatccactccttcctctctgctAAGGTCAAGCGGCTAGGCCTGTTAGCATGATAACAGATTGACCTGCAACCCCTCTGCCCACCCTGAAAAACCACCAAACCACCGAAGCGTATTTACACGAAGCCATGACTCTAACATTAGGAGGATGTGATTTCACTACAGAGGACATGTCACCGCTCTGTTTTAAACCTCCAACAGACAGCATTGATATTACAAAAATCATGACGGCTTCTAAATTTGTTAGAGAATTTTCCTTGTAGAGAATGTTACCTGCACTGTTTACTGATTGAATTATTCAGAGAGGTTCGTGTTTTATCATCCTAAATGTATGTTACTTTTATGTTTTGGCTGCCATTTTGAGAAACATTATTTTATGTCTGCTATTAAGGATGTTTTCCAAGTGCTGATTCAGTGACATTTTGAGTGCAGCAAAACGCCTTTTGAGTCTCCCTGCATTTCTTTAGTAGATTCATAAATGTTTCCCATAGCCAATATCAACATGAAGATTAACTATATGTCATAAAGCTGATTTAAACTTAACCCCTAAATGGATTATTGCCACTGTTAAGTGAAATTACTAAACAAAAATCTCCAACTAACTTGAATGACCTTATGCATAAGAGTACTATGCCTTTGTATCGATACAATATATACATAATTTGACACTATAACTTCTGACACGAAGTTCACCCTCTAGATCATTTTAATTTTGATGAAAGACGGATGGAATAGTTCTAACGTTGGTATTACCAGAGCCTTATAGCTGTAGGTGTTTGGACCTAgaaacctacagtgccttcataaagtataaacattttttttacttgttccacattgtgttgtgttacagcctacattaaaaatggattcaa

Function

GO: NA

KEGG:

id description
K24063 SNTA; alpha-syntrophin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU739258 lncRNA downstream 260521 77613583 ~ 77614091 (-) True G650464
TU738847 lncRNA downstream 400364 77472708 ~ 77474248 (-) True LOC110528539
TU738862 lncRNA downstream 402966 77471421 ~ 77471646 (-) True G650139
TU738779 lncRNA downstream 411617 77462756 ~ 77462995 (-) True G650085
TU738774 lncRNA downstream 419156 77454841 ~ 77455456 (-) True G650080
TU739474 lncRNA upstream 9602 77957897 ~ 77958109 (-) True G650673
TU739529 lncRNA upstream 15533 77963828 ~ 77964206 (-) True G650727
TU739531 lncRNA upstream 17935 77966230 ~ 77966810 (-) True G650729
TU739538 lncRNA upstream 29630 77977925 ~ 77978200 (-) True G650736
TU739557 lncRNA upstream 79940 78028235 ~ 78028540 (-) True G650754
XM_036984117.1 mRNA downstream 347249 77472703 ~ 77527363 (-) False LOC110528539
XM_036984119.1 mRNA downstream 347249 77472703 ~ 77527363 (-) False LOC110528539
XM_036984114.1 mRNA downstream 347250 77472703 ~ 77527362 (-) False LOC110528539
XM_036984116.1 mRNA downstream 347250 77472703 ~ 77527362 (-) False LOC110528539
XM_036984118.1 mRNA downstream 347251 77472703 ~ 77527361 (-) False LOC110528539
XM_036984132.1 mRNA upstream 127214 78075509 ~ 78130469 (-) False necab3
XM_036984133.1 mRNA upstream 127214 78075509 ~ 78130470 (-) True necab3
XM_036984140.1 mRNA upstream 307296 78255591 ~ 78312601 (-) False eya2
XM_036984142.1 mRNA upstream 307296 78255591 ~ 78312601 (-) False eya2
XM_036984143.1 mRNA upstream 307296 78255591 ~ 78312601 (-) False eya2
TU738738 other downstream 491676 77382667 ~ 77382936 (-) True LOC110529034
TU738321 other downstream 858011 77013428 ~ 77016601 (-) False G649684
TU737941 other downstream 1653681 76214701 ~ 76220931 (-) False G649327
TU737942 other downstream 1659099 76214701 ~ 76215513 (-) True G649327
TU737600 other downstream 2253675 75619325 ~ 75620937 (-) False G649025
TU739558 other upstream 80949 78029244 ~ 78029753 (-) True G650755
TU739566 other upstream 95004 78043299 ~ 78046469 (-) True G650763
TU739830 other upstream 327853 78276148 ~ 78312502 (-) True eya2
TU741554 other upstream 1505780 79454075 ~ 79455388 (-) True G652578
TU742081 other upstream 1994906 79943201 ~ 79943728 (-) True G653015

Expression Profile