RNA id: XM_021610676.2


Basic Information

Item Value
RNA id XM_021610676.2
length 5822
RNA type mRNA
GC content 0.53
exon number 13
gene id znfx1
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 79262052 ~ 79275120 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggaggaagaggaagaggaggaggcagaggaggagggagaggaggagatggagagagagggggagggagaggaagagctgCAGATGGTGGCGCTCCTCATGTTCGTCCAATGGGGTACAAAACGTTGGAGGAGCTCTCCGGGAAAGAACCTTCAGAAATAGCCATTACTCTTGCCTCCAGTTATGGACTGCAAGCTCTACTCGACGAACGAGAGATGCGAAAGGACCTCGTTCAGCTCCTCTGCCAAGTCCTCTGCAAGGCCTTCTTGTCCAAAACTGACCGTCAAACTATACAGCACTTGGCTGGCTTAATCAAGCATTCTGGATTCCTCCGAACCATCCTGCCCCATTATGTGATGGGAATGGGGTCAGAGTTCGACCTCACTCGCCGGGAACAGTACCCCCAGCACTTGGACAACATCATGACCCTTCTCGCTGAGGTGCTCAGGATATTCCCGGCTAGCTCGACCCAGGCCGTGTCCATGATAGTGGCCCTCTTCAGACCAGTCATCAACAGCCTGCGAGCTGTGGGGGTGGATGTCCTGGAGCAGACGGAGGAAAACCTGGAGAGGATCCAGGTCCTGGTGGAGCACCTCCaggagagggccagggagggCACCCTAAAGTCAGACAACTACTCCTTCATCACCCCCCAGGAGGACGCCCCACTTGGGGAGGCCGACTTCAGGACCCTATCCATCTACCCCACCCCTGAGGAGTTCCACCAGGAACAGAGGCCCTTCCTCAGGCCCAACCTCATCTTGAAACGCTATGCCAGCGGACTGCTGTACCTGGACACGCACTTCCGGCTCATGCGAGAGGACTTTGTGAGACCTCTTCGAGAGGGCATCCAGCAGCTGCTTCAGAGCCAGCAGGACCTGGGCAATAAAGACGTCCCTTTGAGGAAGAGGCGCTTCGATGACATCACAGTGTACTTTGACACGCGACTGGTGGTTCCGATGTGCACCCGGTCTGGTTTGGCCTATAAGGTCCAGTTTGACTCCAAACCTCTTAAGTTTGTCCGCTGGCAGAACTCCAAGCGGCTGATATATGGGTCCCTGGTCTGCATGTCCTGTGACAACTTTGAGAGTTTCCTGTTTGCCACTGTGTCCGACCGGGACCCCAAGGAGCTAGAGAAGGGCTTTGTCCAGATCATTTTCTCAACGGAGAGCAGGCGAGCCCTAGCCGGAGTGGAGGCCCACCAGTCCTTCCTCATGGTGGAGACAACCGCCTACTTTGAGGCCTACCGCTATGTCCTCGAGGGGCTGCAGGAGCTGGAAGTAGAGGATCTGCCCTTCCAGAGGTATATAGTGGAATGTAGCTCAGAGGTCCACCCTCCTGCCTACCTGCCAATGGGGGATACATATGACCTGTCTGCTATTGCGGTGCCTGAGTTTAAGAGCAGCCGCTTCCACACCCTGGATCCTGAAGCCTGGCCCCCCATGGAGCAGCTGGGATTGGACGAGTCCCAGATGAGAGCACTTCAGCTTGCCCTCACCAAGGAGCTGGCAATCATCCAGGGACCCCCAGGCACAGGGAAGACCTACACAGGACTAAAGATCGCCCAagctcttttgaccaatcaggagGTGTGGAAAGGTGTCTTTGACTCCTCCCCAATGCTGGTGGTTTGTTATACCAACCACGCTCTAGACCAGTTCCTGGAAGGCATCCACAAGTTTTTACCAGACGGTATTGTAAGAGTGGGTGGGCGAAGCAACAGTGAGGCCCTGAAGCGTTTCACTCTGGGGGAGCTGAAAAGGTCCCATGACTTCCGCCGCAGACTACCGCAACATCTTCGCCGTGCCAACAGTGAGATCTATGATGCACTGCGGACCGAAGAGACTAAGATCCAGACTCAGTCTGTGCAGCTGGAGTGCAGTCTGCGAGGCGTTCTAAGGGAACAGTTCCTTCAAAGGTTCATCTCAGAGGTGCACTGGGATAGCCTGTCCCTCCAGCCTGCACTGGATGGTTTTGAGAGCTATGGTGGGAAGAAGCCGTCTATGATAATGGAGTGGCTGGGGTTAGGTTCCACTGCCTTCCAGCAGAGGACACCATATCCTCAAAATGACAATGCAGATGGGGAAATGgacgaagatgaggaggaggaggaggacctgatcgAGATAGCGGAGGAGGCAGACCTGATCCAGATGGAACGCTTTGTAGAAGTCTCAGACATGCATCATAGTCACGATGATGATCGAAGAAAGATGGAGGAGACAGTCAGGGATATGGCGGAAATGATGCTGGCCATGAACCTGGAGAACACTCTGATACATGCAGAGCAGAGTGAAGAAGGCTGGGAGATACAGCGGGTGCAGAAGAGGAAGATGAAACATCGTATTAGGAGAGAGCTGGGCAGCAGCTCAGCCATGAGTGAAGATGAGGAAGACACCATTCTGGATGTGTGGACTCTTAGTCTGCCAGACAGATGGAGACTGTACCGGTTATGGGTGGGGCGTTATCGGACGGAGCTGCGTATGCGAGCCCAGCAGGCAGAGCAGGACTATCAGGATGCTGCCGAGCGTCTGGCTGAGATTCGTCTCCGTGAGGACTTATGTGTCCTGAAGGAAGCCAAGGTCATCGGCATGACGACCACGGGGGCTGCTAGATGGCGCAAAGCTTTGCAGGAAGTGCGCCCCCGCCTAGTGATCGTGGAAGAGGCAGCAGAGGTACTGGAGGCCCACACCATCACCACTCTGAGCCAGGCCTGCCAGCACCTCATTCTCATTGGAGACCACCAACAGCTCCGGCCCAGTGCAACAGTGTTCGAACTGGCCAAGAACTTCAATCTTGAAGTGTCCATGTTTGAGAGGCTGATCAGGATGGACTTTCCATACGTCAGACTTAACTACCAGCATCGCATGAGGCCAGACATTGCCCGTCTCCTGGTCCCGCACATCTACTCTGAGCTAGAGAACCACCCCTCAGTGATGGACTATGACAATATTAAGggtctTCTCTCCAACATGTTCTTTGTGGAGCATAACTACCCGGAGGAGGAGATCAGGGATGGAAAGAGTCGCCAGAACCTCCACGAGGCCTTCTTTGTGGTAGCGTTGTGTCGCTACCTCCTGTTACAGGAATACCAGCCGTCCCAGATCACCATCCTCACCACTTACACTGGCCAACTCCACTGTCTGCGCAAACTCATGccagccaaagagttcaatgggGTAAAAGTTCATGTTGTTGACAAATACCAAGGAGAGGAGAATGATATTGTCCTGCTGTCGCTGGTTCGAAGTAACAAAGAGGGGAAGGTGGGCTTCTTGAACATCCCCAACCGCGTCTGTGTGGCCCTGTCACGGGCTAAGAAGGGTCTCTACTGCGTTGGAAACATGGCCATGTTGGGAAAAGTCAAGCTTTGGAGCAACATCCTGCACACACTGCGAGAGAAAGACCAAGTGGGCCCTGCCCTGACCCTGTGCTGCCAGAACCACCCTGAGCGACACATTAAAGCATTCTGCGGCGACGACTTCAAACATGCTCCTGAGGGAGGCTGCAACCTGCCCTGCGAGTTCCGCTTGAACTGTGGTCACGTGTGCTCCAGTGCTTGCCACCCATACGACCAAGAGCACAAGAAGTACACATGTAACAAGAAGTGCCAGAAGGTCCTCTGTGAGCTGGGGCATCGATGCAAACTTCTGTGCTACAAGAAGTGCCCTACAGACTGCCTTACGCGGGTAGAGAAAATCGTACCGCGATGCCAGCACAAGCAGATGGTGCCCTGTCACCAGGCTCCAGAGCGGTTTGTGTGCCAGGAGCCCTGTCAGAAGATGCTGGTGTGTGGCCATCTATGTGCCACTGTGTGTGGGGAGTCCTGCACCACCACCTGCATGGCAACAGTCACCTTGGAGCTCAAGTGTGGACACAAGCAAGAAGGTCCCTGTCATAATAGGAGATCTACAGTACAGCCGGACTGCAGGGCACCTTGCAAACAGATTCTGAAGTGTGGCCACCCCTGTCCTGGTTCCTGCCAGAGATGCCACCAGGGCCGCTTCCACTTGGGCTGTTTCCACCGATGTGATAAGCTCCTAGTCTGCTCCCACAAGTGTCGGGAGCCCTGTACACGTGACTGCCCTTCCTGTCCAATTCTCTGTGAGAATCGCTGCATCCACAGTGCCTGTAAGAAGCCCTGCGGCCAGCcctgtgccccctgtatagagccctGTGCCTGGCAGTGTCCTCACCAGGGCTGCAGCAAGCTCTGCCATGAGCCTTGTGACCGTCCACCCTGCACCCAGCCCTGCACCAAAACCTTGCAGTGTGGGCACCCCTGCATCGGCCTGTGTGGAGACCCCTGCCCCAACAAGTGCCGTGTTTGCCACCCCGAGGATGTTATGGAGATCTTCTTTGGTACGGAGGACGATGCTGAGGCCTGCTTTATTCAGCTGGACGACTGCGGACACGTCTTTGAGTCCACGTCCATGGATAAATACATGGGGATGGATGACAACCAGCAGGCTACCGAGGAGCAGCTCGCAGTAAAGTTGAAGGAGTGCCCCAGGTGTCGCACTCCCATCCGCAGGAATCTCCGGTACGGGGCTTACGTCAACCGGAGTCTGGCGGTAATTGAGAAAGTTAAGGAGAAGATTAATGGAGCACAGTCAGATATTGCGGCACAAAAGGCGATCCTTAAGCAGCAATGGATTGACAAGGAGGACTTGCAAAGGTATCTACCAATGGAGTACATACAGATCGAGAAAAAACTAAGGGCCTCCCACCTCACAGCTAAGGAACTGTGGATCACGGAAAACAAGATGGCCTTCCTTGAGAGAGTTGGCAAGTTGCTGAAGATTAGTAGGCAGCACATGTCAAGTGCGGAAGTTTCCCACTTTGATGAGAAAGTCGAAGAGTTCCTGAGGTGGCTGATGGATTGTTACCAGAAGTTCTCGGAGCAGCAGGCTTCTGATCTGCAGAGCGAGCTACAGAGGCTGTCCTTTTTGGCCGAGCTCAACGCCCGCTGCAAGATGGCTAAGGACACAGGTCGTGGGGTCAAGGTTCAGGCTGAGGTCACAGCCATAAGGGAGGTTCTGGAGAAAATGCAGCCATTCACTCTGCAAGACGAGGACTCAGTAAAGCAGGCACTGAAAGACTTGGCTGAAAAGCTACCAAGCTCTGGCCTGGGGATCAGTGATGATGAACGAAAGATGATACTTTCAGCCATGAGTTTGCCTAAAGGCCACTGGTACTCCTGCCCCAACGGTCACGTCTATGCCATCGGAGATTGTGGAGGTGCCATGATGAGCCGTAACTGCCCAGAGTGCAATGCTACGATCGGTGGAGCAAACCATGCTCTGGTAAGTGGCAACAGAGTGGCTTCAGAGATGGATGGGGCACAACACGCTGCGTGGTCTGAAGCTAACAATATGCTGAACTTTGGTCTGGTGAACCTTGCTGATTAAaaactgattattttctctgTTTAATTGTGACTTCATGACCGATGTGACAATTATCATAATTTGCACTCCAGAAAGCGTTGCTATATCAATTGATATATTTAAATGCTGAAATCACTGTAAATGATTCATTGAATGTGATGAAATCAATCTGCTTTGTCAATATAATATTTATTGTTATTCTACTTTTTAAAGTGATATCACTCCAGAGTACAATACTGTATTTTCAACCCAATGTACAATTATGAATTATGCAAATGTTTAGGCAGGATTTTTGGGCCTCAACATTTAgacacctgtgtgtatttttccAGTCACAccaatagatggcagcagtgtattgTTCATTTAACAAAGAGTTGGCTTGATATGTGCAATATGTTTTTTCTAATAAAACATATTTGAGATGATCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU741192 lncRNA downstream 37731 79224048 ~ 79224321 (-) True G652268
TU741190 lncRNA downstream 40485 79221338 ~ 79221567 (-) True G652266
TU741167 lncRNA downstream 74499 79187339 ~ 79187553 (-) True G652243
TU741002 lncRNA downstream 97771 79163970 ~ 79164281 (-) True G652093
TU740960 lncRNA downstream 129714 79132139 ~ 79132338 (-) True G652052
TU741163 lncRNA upstream 217 79275337 ~ 79276683 (-) True LOC110528554
TU741239 lncRNA upstream 46255 79321375 ~ 79321620 (-) True G652314
TU741260 lncRNA upstream 111811 79386931 ~ 79387396 (-) True G652335
TU741553 lncRNA upstream 178955 79454075 ~ 79457103 (-) False G652578
TU741565 lncRNA upstream 190327 79465447 ~ 79466226 (-) True G652589
XM_036984155.1 mRNA downstream 145788 78846274 ~ 79116264 (-) False LOC110528552
XM_036984152.1 mRNA downstream 145796 78846274 ~ 79116256 (-) False LOC110528552
XM_036984151.1 mRNA downstream 156918 78846274 ~ 79105134 (-) False LOC110528552
XM_036984153.1 mRNA downstream 156918 78846274 ~ 79105134 (-) False LOC110528552
XM_036984156.1 mRNA downstream 156919 78847748 ~ 79105133 (-) True LOC110528552
XR_002474272.2 mRNA upstream 131 79275251 ~ 79277209 (-) False LOC110528554
XM_036984157.1 mRNA upstream 4279 79279399 ~ 79301866 (-) False ddx27
XM_036984158.1 mRNA upstream 4279 79279399 ~ 79301866 (-) True ddx27
XM_021610678.2 mRNA upstream 33113 79308233 ~ 79311901 (-) True snrpb
NM_001160532.2 mRNA upstream 67162 79342282 ~ 79346292 (-) True ube2c
TU739830 other downstream 949550 78276148 ~ 78312502 (-) True eya2
TU739566 other downstream 1215583 78043299 ~ 78046469 (-) True G650763
TU739558 other downstream 1232299 78029244 ~ 78029753 (-) True G650755
TU738738 other downstream 1879116 77382667 ~ 77382936 (-) True LOC110529034
TU738321 other downstream 2245451 77013428 ~ 77016601 (-) False G649684
TU741554 other upstream 178955 79454075 ~ 79455388 (-) True G652578
TU742081 other upstream 668081 79943201 ~ 79943728 (-) True G653015
TU742099 other upstream 750840 80025960 ~ 80044704 (-) False rab22a
TU742383 other upstream 1070682 80345802 ~ 80347567 (-) True G653274
TU743122 other upstream 1375470 80650590 ~ 80661028 (-) False LOC110528585

Expression Profile