RNA id: TU743119


Basic Information

Item Value
RNA id TU743119
length 1558
lncRNA type sense_over
GC content 0.38
exon number 3
gene id LOC110528585
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 80650590 ~ 80723518 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacacacacacacacacacacacacacacacccacacacacacacacacacacacacacacacacacacttatttcaAAGCCAATGCCTATGACTCGGACTGCTTCTTGTcatagctactgtactgtaagaTCGAAAAGGGCAAAGAAAAACTATGTTTATATATTATTGTTTAGCGTTTTAATTTGAGTCACTGTAATACTACTGTTGATACAGCGCTAGAATGAAAATTATCTGACAACACCAGCTCCCATTTAGATAAGATTGATCAGAACACATTAGTCTGTTGTCTTGTTGAAGTCCTTAGGGTCTTGTTCATTAGGACACACCACGGTAAAaagttttgcaacggaaaaccaAAGCAAGTGTTTCTTACAAAGTTCAGATAGTCCCtttctgttttcttccatttgataCCTAATGAACACTGCCCAGCCTTCTGACTGCAGCACTGCTATGGCCATAACATTGGAATCAGTTGAATTGATTGTGTTGTGACCGTTTAGGCTGTAGTTTTGTTTTGTGTCGGTCGGCTGCGAGGAACAGCCATTGAGGAATTCACAATAACAATCCATGACCTGAATGATGTTGAAGAAAACAACTTCAACGTACGAAACGACAATATCAACAGCTTCAGCTCATGGTAGGAGATATTagatacaaacaaacaaagtttATAATTGTGGTTGAGTACCACATTGTTCAGGTACTTCACATAACCCCCTGCAGCCCCTTAGATGTCCTCAATAGTTAGAAACCTTGATGGGAAAGAtgattgtaaataataatttattacagTTTGTATTTACATAAAAGTGCCTTATGGCTTAATTCAAAAAGAGAGATAATTAATTGGTAGGAAGAGGATGATAATTAACTTTGGAGCTACTGAAGGTTTACTGAAGGTTTACTGAAGGTTTACTGAAGATTTATGGTTTATTGAAGGTTTACTAAAGGTTTACTGAAGGTTGACTGAAGGTTTACTGAAGGTTTATGGTTTACTGAAGGTTTACTGAAGGTTTACTGAAGGTTTATGGTTTACTGAAGGTTGACTGAAGGTTTACTGAAGGTTAACTAAAGGTTTACGGTTTACTGAAGGTTTACTGAAGGTTTACTAAAGGTTTACTGAAGGTTTACTAAAGGTTTACTGAAGGTTTACTAAAGGTTTACTAAAGGTTTACTGAAGGTTAAGGTACATAATTTGCAGAGTGTTTCACGACACAGTTTAAAACCTTCAAGTAGGGCCTGGAGTTTTCTCTGGTCAGGTTACGTGGTCTGGAGAAACTCCTGGCCCCATCACCCCTGAAGTGAATGGATATGAGAAGTTGAGCAGTGAGACTATGGTGGAATATACAGTGCTGtacacacactgaatatacagcCCTGTACACAATGAGAATACAGCCCTGTACACACAATGAATATACACAATGAATATACGTCCCTGTACACGCAATTAATATACGTCCCTGTTGTCTACTGGGCCTATGAGCATGTAGAGTCTACTTTGTGATTCAGAAATTGCTGGACAATCTTGTATTAAATGCATTAAAGAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU743106 lncRNA downstream 7832 80644787 ~ 80645060 (-) True G653909
TU743057 lncRNA downstream 99114 80551042 ~ 80553778 (-) True G653864
TU743038 lncRNA downstream 126567 80525888 ~ 80526325 (-) True G653846
TU742536 lncRNA downstream 183984 80468368 ~ 80468908 (-) True G653419
TU742474 lncRNA downstream 238550 80414045 ~ 80414342 (-) True G653358
TU743171 lncRNA upstream 66915 80745125 ~ 80747556 (-) False G653950
TU743176 lncRNA upstream 66915 80745125 ~ 80747556 (-) True G653950
TU743206 lncRNA upstream 100550 80778760 ~ 80780691 (-) False G653977
TU743210 lncRNA upstream 100550 80778760 ~ 80780691 (-) True G653977
TU743220 lncRNA upstream 118964 80797174 ~ 80797725 (-) True G653985
XM_021610718.2 mRNA downstream 40106 80558564 ~ 80612786 (-) True LOC110528589
XM_021610719.2 mRNA downstream 40110 80558564 ~ 80612782 (-) False LOC110528589
XM_036984180.1 mRNA downstream 299886 80261240 ~ 80353006 (-) True LOC110529043
XM_036984181.1 mRNA downstream 299887 80261240 ~ 80353005 (-) False LOC110529043
XM_021610734.1 mRNA upstream 620697 81298907 ~ 81299743 (-) False LOC110528602
XM_036984201.1 mRNA upstream 623326 81301536 ~ 81313006 (-) True LOC110528600
XM_021610731.2 mRNA upstream 673000 81351210 ~ 81353282 (-) False tma7
XR_005052680.1 mRNA upstream 744922 81423132 ~ 81430600 (-) True LOC118965322
XM_036984214.1 mRNA upstream 988476 81666686 ~ 81844047 (-) False LOC110528605
TU742383 other downstream 305325 80345802 ~ 80347567 (-) True G653274
TU742099 other downstream 608188 80025960 ~ 80044704 (-) False rab22a
TU742081 other downstream 709164 79943201 ~ 79943728 (-) True G653015
TU741554 other downstream 1197504 79454075 ~ 79455388 (-) True G652578
TU739830 other downstream 2340390 78276148 ~ 78312502 (-) True eya2
TU743208 other upstream 100550 80778760 ~ 80780691 (-) False G653977
TU743209 other upstream 100550 80778760 ~ 80780691 (-) False G653977
TU744821 other upstream 837327 81515537 ~ 81516722 (-) True G655289
TU744829 other upstream 858347 81536557 ~ 81537098 (-) True G655297
TU744851 other upstream 944193 81622403 ~ 81651265 (-) False G655316

Expression Profile