RNA id: XR_005052680.1


Basic Information

Item Value
RNA id XR_005052680.1
length 2840
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC118965322
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 81423132 ~ 81430600 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTAAAGTGTATTGTAATGTAAAGTGTATTGTAATGTAAAGTGTATTGTAATCTAAAGTATATTGTAATGTAAAGTCTATTGTAATGTAGTGTTTTGTTATTTCAGGTGTCCTGGCCCAGGAGAACATAGTGGGAGACCCTCATGCTCAGGGATCCTCCTACATCGCTGCTTCCTATGTAAAGTACCTGGAGAGTGCTGGAGCCAGGGTTGTCCCCATAAGAATAAACAGAATCGATGAAGAGTATGAGAAGATATTTAACTCAATAAACGGGCTGCTGCTACCAGGTGGGGGTGTAGATCTGCAGACTTCCCAGTTCAGTCGTCTGTCAAAGATTTTCTGTGATCTGGCTATCAAGACCAACTGATTACTTCCCCATATGGGGCATGTGCCAGGGCCTTCAGCAGATGACAGTACTGACCAGCAACAAGAACCTTCTGACTCCGACAGAGACCAAGGCTGTGGCCCTGCCTTTCACATTCACCCCAGCTTCCATGAAAAGCCGCCTGTTCAAGGCCTTTCCCAGAGACCTGCTCCTGTCTCTGTCAGAAGACAACATCACCTCCAAGTTCCACAGCTGGAGTCTATCGCTACAGCGAATCGCTATCCGTTCTATGCTGTCCAGTGGCACCCTGAGAAGAGTCCCTTTGAGTGGGTAGATAAACCAGGCATGGTCCACTCTGCTGCCTCCGTCAGAGCATCCTTCTACACAGCACACTTCTTTGTCTCCGAGGGTGAGTTATTTTAGTCCACTTTCCTTTAaccaggcaaatcagttaagaacaatttcttatttgcAACGGTGGCCTGGTGAGTGACTGTAGATTAGTTATTGGATTGTACAACTCTGGCCTGGTGAGTGACTGTAGATTAGTTATTGGACTGTACAACGCTGGCCTGGTGAGTGACTGTAGATTAGTTATTGGACTGTACAACGCTGGCCTGGTGAGTGACTGTACAACTCTGGCCTGGTGAGTGACTGTAGATGACAGTCCAGTAATTGGATTGTACAACTCTGGCCTGGTGAGTGACTGTAGATGACAGTCCAGTAATTGGATTGTACAACTCTGGCCTGGTGAGTGACTATAGATGACAGTCCAGTAATTGGATTGTACAACTCTGGCCTGGTGAGTGACTATAGATGACAGTCCAGTAATTGGATTGTACAACTCTGGCCTGGTGAGTGACTATAGATGACAGTCCAGTTGTTGGATTGTACAACTCTGGCCTGGTGAGTGACTGTAGATTAGTTATTGGATTGTACAACTCTGGCCTGGTGAGTGACTGTAGATTAGTTATTGGATTGTACAACTCTGGCCTGGTGAGTGACTGTAGATTAGTTATTGGACTGTACAACGCTGGCCTGGTGAGTGACTGTAGATGACAGTCCAGTAATTGGATTGTACAACTCTGGTCTGGTGAGTGACTATAGATGACAGTCCAGTTGTTGGATTGCACAACTCTGGCCTGGTGAGTGACTGTAGATGACAGTCCAGTTGTTGGATTGTACAACTCTGGCCTGGTGAGTGACTGTAGATGACAGTCCAGTTGTTGGATTGTACAACTCTGGCCTGGTGAGTGACTGTACAACTCTGGCCTGGTGAGTGACTGTACAACTCTGGCCTGGTGAGTGACTGTACAACTCTGGCCTGGTGAGTGACTGTACAACTCTGGCCTGGTGAGTGACTGTACAACTCTGGCCTGGTGAGTGACTGTACAAACCTGGCCTGGTGAGTGACTGTAAATGACAGTCCAGTTGTTGGATTGTACAACTCTGGCCTGGTGAGTGACTGTACAACTCTGGTCTGGTGAGTGACTGTAGATGACAGTCCAGTTGTTGGATTGTACAACTCTGGCCTGGTGAGTGACTATAGATGACAGTCCAGTAATTGGATTGTACAACTCTGGCCTGGTGAGTGACTGCAGATGACAGTTCAGTTATTGGACTGATGTGATTTCAAGTCTTGAGAACTTTGTGTggtttaaaaaacaaataaaacgtTTATTTAAATGTACTACCATTGGATGTTATGATGCAGTGTTTTATTAATGGGAAAATATGTAAATTCTCCCATCTTCCATGTAAAAACCATTACAACAACATGGCTGGAACATCTGAAAATATAACGAAACTGCCTGCACAAATCTGTATGAAATCAGGGTTTTTTTCTGCACAGAAAAGTTCTGGCCTAAAGGTTTTTTCAGTCCGCCTATCTCCAATAATTCCCGGAATGGTAAAACGTTTTTGAGTGTAAACTTAAAACAACTTAAACCAGATCTAAAGTTTATTGGAAAGATAGCAGACTTATATATTTATCTATAAGAACTTAACAATCACCACAATAACAGTCAGGGAGAATTTTAAATTCCCAAATTGATGCATTCAGGAGTATTTTTGTCATGgcatggggcccccattgattttgttatcgTTTTTTGAGTCACTCACATAGCACAAGCCATGTCAAATTGTTTTTATAACTGAAACATTTTATCTCCGTtacatggcaaaatgtgaagaatttGCTTTATAACAGTCACACCCACCACCTAAGCCCCATTTGGATCCAGAAAAAACTCTGGAAATACATTGATAGCACATTTTAGTGCTACCACAATAGTGTTTTTTATTGTTTACTCACCCATGTGTCAAACTAATGCTGCTATttctattgacttggccaaagcttttgatacggtagaccattctaTTCTTGTGGGCCAACTAAGGAGTATtgttgtctctgaggggtctttggcctggtttgctaactacctctctcaaagagtgcagtgtaaaAAGTCATagaatctgctgtctcagccactgcctggcaccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU743782 lncRNA downstream 23779 81398668 ~ 81399353 (-) True G654488
TU743695 lncRNA downstream 42642 81379905 ~ 81380490 (-) True G654414
TU743667 lncRNA downstream 69883 81351211 ~ 81353249 (-) True tma7
TU743668 lncRNA downstream 76978 81328435 ~ 81346154 (-) True G654387
TU743671 lncRNA downstream 113704 81309225 ~ 81309428 (-) True G654390
TU743812 lncRNA upstream 16835 81447435 ~ 81450615 (-) True G654513
TU743823 lncRNA upstream 38546 81469146 ~ 81469417 (-) True G654523
TU743847 lncRNA upstream 67094 81497694 ~ 81497937 (-) True G654547
TU743856 lncRNA upstream 74232 81504832 ~ 81505471 (-) True G654556
TU744816 lncRNA upstream 80228 81510828 ~ 81555995 (-) True G655284
XM_021610731.2 mRNA downstream 69850 81351210 ~ 81353282 (-) False tma7
XM_036984201.1 mRNA downstream 110126 81301536 ~ 81313006 (-) True LOC110528600
XM_021610734.1 mRNA downstream 123389 81298907 ~ 81299743 (-) False LOC110528602
XM_036984185.1 mRNA downstream 699614 80655573 ~ 80723518 (-) False LOC110528585
XM_036984214.1 mRNA upstream 236086 81666686 ~ 81844047 (-) False LOC110528605
XM_036984215.1 mRNA upstream 236086 81666686 ~ 81844047 (-) False LOC110528605
XM_036984213.1 mRNA upstream 236086 81666686 ~ 81898007 (-) False LOC110528605
XM_036984211.1 mRNA upstream 236086 81666686 ~ 81992596 (-) False LOC110528605
XM_036984212.1 mRNA upstream 236086 81666686 ~ 81992596 (-) True LOC110528605
TU743208 other downstream 642441 80778760 ~ 80780691 (-) False G653977
TU743209 other downstream 642441 80778760 ~ 80780691 (-) False G653977
TU743122 other downstream 762104 80650590 ~ 80661028 (-) False LOC110528585
TU742383 other downstream 1075565 80345802 ~ 80347567 (-) True G653274
TU742099 other downstream 1378428 80025960 ~ 80044704 (-) False rab22a
TU744821 other upstream 84937 81515537 ~ 81516722 (-) True G655289
TU744829 other upstream 105957 81536557 ~ 81537098 (-) True G655297
TU744851 other upstream 191803 81622403 ~ 81651265 (-) False G655316
TU744948 other upstream 322955 81753555 ~ 81753966 (-) True G655387
TU745007 other upstream 402078 81832678 ~ 81833031 (-) True G655433

Expression Profile