RNA id: XM_036984211.1


Basic Information

Item Value
RNA id XM_036984211.1
length 5674
RNA type mRNA
GC content 0.52
exon number 24
gene id LOC110528605
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 81666686 ~ 81992596 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctctctctctctctctctctctctctctctctctctctctctctccctctttctcctatctctctctcatctctctcctctctctctctctctcctctcttcattcctCTCAGTTGTTTCGATGCAGCTGTAGCCTCTCTCAACTGATGTGACATAACGCAAGTGCAGAGGTCCCTACAGAGCTATTGAACCAGAAGGCTTTGAACTGGGAACTGTTGGGGACTGTTTGTGGAGATCCGTGTTCTAAGAGGGTGTTGTTCTGAGGAGTAGTTCCGGAAACAATACAGGATGGACAGAGTGAACCGGGTGCTGCAGATAGTGAGGCGAATGTCCccgaggaagagagggggagagagggggaggacgtCCCCCTCCCTGGGGGAGCTGGAGAGCCCTGAGACCTGCGAGGAGAGCCTCTGTTCCCTCAGTCTCTGCATCAGTGATGATGGTCCTTACTCTAAAGGGAACAAGGACTCACAAGGGACAGACAATTCCCTGCCCTCCAGGAGACAGAGTATCCCAGAAGATCTGCGGGGTGTGACGATAGTAGAGCTGATTAAGAAGGAAGGCAGCACCTTGGGCCTCACCATCTCCGGAGGAACAGACAAGGACGGAAAGCCCCGCGTCTCCAACCTACGACCAGGAGGACTGGCTGCCAGGAGTGATCAGCTGAACGTTGGCGACTACATCAAGTCAGTCAATGGTATCAACCTGACCAAGCTGAGACATGAAGAAATCATCAGTCTGTTGAAGAACGTGGGAGAACGAGTGGTGCTGGAAGTAGAGTATGAACTGCCCCCTTCAGCACCAGACAGCACATCAGGTGTGATTTCCAAGACAATCGAGATATGTTTGCACAAAGAAGGCACCAGCTTCGGCTTCGTCATGAGAGGGGGCTCACACGAAGACTGGAACAAATCACGCCCCCTGGTGGTGACATACGTCCGGCCGGGAGGCCCTGCAGACAGAGAGGGCACTCTGAAGCCAGGCGACCGTCTGATGAGTGTTGATGGGGTACCTCTCCACAGTGCCAACCATGGAGATGCCCTCACTGTGCTCAACCAGTGTGGTCAGGAGGCCCTTTTCCAGATCGAGTATGACGTCTCTATCATGGATACTGTGATGAATGCATCTGGTCCCCTATTGGTGGAGATCGCCAAATCACCGGGGGCAGCTCTCGGTATCACCTTGACAACCGCCACCCACAGGAACAAGCAGGTCATCGTCATCGACAGGATCAAAGCAGCTAGTGTGGtggacagGAGTGGAGCCCTCCATATAGGAGACCACATCCTGTCCATCGATGGGACCAGCACGGAGCACTGTTCAGTCCTGGAGGCCACACAGCTATTAGCCAGCACCTCAGACCAGGCCAAGCTAGAGATCCTCCCCGCCCACCACAGCAGACTGCCCAGCAAACCCCAGGACACTGTGAAGGTTCAGAAGAGTGACAACCCCCACTCGTGGGACCCCTGTGTGAACTACTGCCCCCCCCAGCACCCCTCCTCTCACTGTAAGACAAACACCTGGAccacctcctccaacccctcCAGCACACAGGAATATTGCAAATccctagTGTCGACCAACTTCTCCCCCggttccaccaccaccaccacatcaggCCCTGGGTCGACCAGCCAGATCTCCAGTACCCTGCCCCGTACAGCTGTCCCCATGAGTCCACGCAACTCCATGATGAAGAGACGACAGAGGAAAAAAGAACTTAAGAGCTCATctgtgtCACTGGCATCCAGTACAGTGGGCCCTGGTGGTCAGATCGTCCACACAGAGAGCAGTGAGATCACCCTGAGAGGAGACCCTCTAAACGGCTTTGGGGTCCAGCTACAGGGAGGCATCTTTGCTACAGAGACCCTCTCTGCTCCGCCACTCATACGTTTCATAGAGCCGGACAGCTCGGCAGAGAGGTGCGGCCTGCTGCAGGTTGGAGACAGACTCCTGTCCATCAACGGAATCCCCACGGAGGATGGAACACTGGAAGAGGCCAATCAGCTTCTCCGAGACGCCGCTCTGGCCAATAAGGTCTCTCTTGAAATAGAGTTTGACGTCGCAGaGTCTGTTGTGCCCAGTAGTGGAACATTCCATGTGAAACTGCCGAAGAAGAGAGGGGTGGAGCTGGGCATCACTATCAGTGCCAGTAAGAAGTCTGGAGAGCCTCTAATCATCTCAGACATAAAGAAAGGCAGTATGGCTCACAGgACTGGTACCCTGGAGCCAGGTGACAAGCTGCTGGCAATAGACAACATCAGACTGGAGAACTGTTCCATGGAAGACGCCTGTCAGATCCTACAACAGGCAGAGGACCTGGTCAAACTCAAGATCCGCAAGGACGAGGACAACTCAGATGAACAGGAGACGTCTGGTTCTATCATCTATACGGTAGAGCTGAAGAGATATGGAGGCCCCCTGGGCATAACCATCTCAGGAACAGAGGAGCCATTTGACCCGATCGTTATCTCTGGCCTCACCAAGAGGGGCCTGGCTGAGAGGACCGGAGCCATCCATGTGGGAGATCGTATCCTGGCTATCAACAGTGTCAGTCTGAAGGGAAAGCCGCTCAGCGAGGCCATTCACCTGCTACAGATGGCCGGGGAGACGGTCACACTCAAGATCAAAAAACAGGTCGACAtaACAGAcgagaagaagaaggatggagagatggagaatgaTTTGAGTGACACCGAGGACATATCAGACATGACAGACTCTCAGAAGACCAACAAGCTGTCAGAGATCTACTCCACCACCATACCCAGTGTGGACTCTGCCATGGAGTCCTGGGACGGATCCGGCATCGACGCGGGCTACGGAAGCCAAGGAACCTACATCCACCAGGCAGCAGGCATCGCCCTGCACCCCCATGAGTGGAGGAGTGCCAAGCAAAGGAACAGCACCCCACCCCCGGGCCGCCGTAGTAAGAACTACCCTTTCAGTGACGGGGGCTTCAGTGAAGACGACTGGGACAAACCTTCAGGATACACCAGCCAGCCTCATAGTGACGGCATCATGCTAGACCACGAGGACAGTTTCTGGTGTCAGGCCCTGGAAGACTTGGAGACCTGTGGACAGTCTGAGCTGCTCAGAGAGATAGAGGCATCCATCATGACGGGCAGTGCCATCAGTATTGGGGTGGATGGTAACAAGTCCCATGCCATCTCCCACCCTGGGGACCCCGTCAGCCAGCCCCGCGTCAGCCCTCTACGGAGGAGCTCCCTCCTGCACCACGATGCCAAGACCCACCTGCACCAGGAGGTCCACCTCCACCAGGAGGCCCATCTGCCCCCGGAGGCCCAGCTCCTGCACCACGAGGCCAGGACCCAGCTGCATCATGAGGCCAAGGCCAAGAACACACTCCGGGTGTCTGAGAAGACCTGGGAGTCCCGCAGAATCAAGGAGGAGATGCAGGAGATCCTATCCCCGAACCCTCTTGAGCTACACAAGGTGACGGTGATGAAGGATCCAGAGAGCGATGACTTCGGCTTCAGCGTCTCCGACGGGTTCCTGGAGAAAGGTGTTTATGTCAACATGATCCGTCCCGAGGGCCCGGCTGACCGTGCAGGCCTGAAACCATATGACAGGATCCTACAGGTGAACCACGTGCGTACCAGAGACTTTGACTGCTGCCTGGCTGTCCCCCTGATCACCGAGGCCGGGGACAAGCTGGAGCTGGTGATCAGCAGGAACCCTCTGGCCCAGCAACTGCACCATGAACCGGACTGTCTGGACCAGGACCAAGGACTTCTCATCTCTGCACTGCAGTCCAACAGTAGGGAGCACCACCACTATGCCACTACAACTCGAGCCATGGACCTGTGATTTACAGACACGCAGTACAGACACACGGAACCACAGACCAGGAATAAGGACTACTGATTTCTGCACTGCAGTCCAACAGCAGAGACCACCACTACAACCCGAGCCATGGATCCTGTGATTACAGACACAGACTACAGTCACACCAAGCCACAGACCACGACCATGGAACTGTATCTGAATCTACAACCGCAAACAAAACCATGTGTTTACAGACACACCAATGACCTGTGACTTTACAGCCTGCAGACACACCAATGACCTGTGACTTTACAGCCTACCGACACACCAATGACCTGTGACTTTACAGCCTACAGACACACCAATGACCTGTGACTTTACAGCCTACAGACACACCAATGACCTGTGACTTTACAGCCTACCGACACACCAATGACCTGTGACTTTACAGCCTACAGACACACCAATGACCTGTGACTTTACAGCCTACAGACACACCAATGACCTGTGACTTTACCTGTGACTTTACAGCCTGCAGACATACCAATGACCTGTGACTTTACAGCCTACAGACACACCAATGACCTGTGACTTTACAGCTTACAGACACACCAATGACCTGTGACTTTACAGCCTACAGACACACCAATGACCTGTGACTTTACCTGTGACTTTACAGCCTACAGACACACCAATGACCTATGACTTTACAGCCTACAGACACACCAATGACCTGTGACTTTACAGCCTACAGACACACCAATGACCTGTGACTTTACAAACAAAAGACACACAGTCAAAGACAAGCGCCATGGACCTATACATACTACAGACACACTTTGGGCCTGTGATTACAGACACACCATGTCTCAGACCTGTAACTACAGACCTATAACTACAGACCTGTAACTACAGACCTGTAAATACAGACCTATAACTACAGACCTATAACTACAGACATGTAACTACAGACATATAACTACAGACCTGTAACTACAGACCTATAACTACAGACCTATAACTACAGACCTGTAACTGCAGACCTGTAACTGCAGACCTGTAACTACAGGCCTATAACTACAGACCTATAACTACAGACCTACAACTACAGACCTGTAACTACAGACCTGTAACTACAGACCAGTAACTACAGACCTGTAACTACAGACCTATAACTACAGACCTGTAACTACAGACCTGTAACCACAGACATATAACTACAGACCTATAACTACAGACCTATAACTACAGACCCATAACTACAGACCTGTAACCACAGACATATAActatagacacacagagacagaacaacaGACCAGCATCACAGACCTGTAATTACAAACACACTGAACCACAGACCAGCATCACATACCTGTAATTACAAACACACTGAACCACAGACCAGCATCACAGACCTGTAATtacaaacacactgaaacacagaccagCATCACAGACCTGTAATTACAAACACACTGAACCACAGACCAGCATCACAGACCTGTAATTACAAACACACTGAACCACAGACCAGCATCACAGACCTGTAATTACAAACACACTGAACCACAGACTAGCATCACAGACCTGTGGCCAGGGGTTCCACTGACACGGAACCACAGACCAGCATCACAGACCTGTGGCCAGGGGTTCCACTGACACGGAACCACAGACACTACCCGTGGTGGCTGGACTTGTACCGACAGCTACACCGTACAGACTCACAGAACTCTGTCTTCAGCCCTATCAAacactgtaaaaaaaattataatgtgAAAATGTTTTTACAGATTCCTTTATACCCCAAGTCTCGTGTTTCCTGTGTTGTCATTATGTCAACCccttatatatataaatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU744849 lncRNA downstream 15421 81647851 ~ 81651265 (-) False G655316
TU745120 lncRNA upstream 6563 81999159 ~ 81999479 (-) True G655534
TU745125 lncRNA upstream 14866 82007462 ~ 82007961 (-) True G655539
TU745129 lncRNA upstream 18981 82011577 ~ 82011877 (-) True G655542
TU745140 lncRNA upstream 34909 82027505 ~ 82027714 (-) True G655551
TU745151 lncRNA upstream 55370 82047966 ~ 82050318 (-) True G655556
XR_005052680.1 mRNA downstream 236086 81423132 ~ 81430600 (-) True LOC118965322
XM_021610731.2 mRNA downstream 313404 81351210 ~ 81353282 (-) False tma7
XM_036984201.1 mRNA downstream 353680 81301536 ~ 81313006 (-) True LOC110528600
XM_021610734.1 mRNA downstream 366943 81298907 ~ 81299743 (-) False LOC110528602
XM_036984187.1 mRNA downstream 943168 80656000 ~ 80723518 (-) False LOC110528585
XM_021610740.2 mRNA upstream 128742 82121338 ~ 82132214 (-) False sec13
XM_036984220.1 mRNA upstream 128742 82121338 ~ 82132214 (-) True sec13
XM_021610741.2 mRNA upstream 152672 82145268 ~ 82152444 (-) True LOC110528607
XM_036984462.1 mRNA upstream 866785 82859381 ~ 82860786 (-) True LOC118965368
XM_036984233.1 mRNA upstream 880113 82872709 ~ 83038968 (-) False LOC110525201
TU744851 other downstream 15421 81622403 ~ 81651265 (-) False G655316
TU744829 other downstream 129588 81536557 ~ 81537098 (-) True G655297
TU744821 other downstream 149964 81515537 ~ 81516722 (-) True G655289
TU743208 other downstream 885995 80778760 ~ 80780691 (-) False G653977
TU745266 other upstream 233356 82225952 ~ 82226545 (-) True G655651
TU745346 other upstream 335802 82328398 ~ 82333298 (-) False G655715
TU746032 other upstream 1334883 83327479 ~ 83328180 (-) True G656314
TU746415 other upstream 1615936 83608532 ~ 83615998 (-) True G656671
TU747690 other upstream 1961651 83954247 ~ 83956768 (-) True LOC110528632

Expression Profile