RNA id: XM_021605164.2


Basic Information

Item Value
RNA id XM_021605164.2
length 4550
RNA type mRNA
GC content 0.51
exon number 1
gene id LOC110525199
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 82778373 ~ 82782922 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGCACCATTTATTTCACGTTGGCACAGTATACGTTTCCACGATACAGTTTACATTTACATGATCCTGCCTAATTATGTAATTTGTGTCGCATATTATTTGCAAAATTGAGGTTTGGGCAATATGCGTCCCATGTCACGTCACTACCCCTCCCGCGACGTCGACTCAAACCCCTCCCATTGGCGGAACGCCACATTCCTTTTGTCCAAGATGGCGGCGTTGATGTCGGTTCTCtgataatgtttttaaatgtgtttatCATTTTAATTCACTATACATGCAAAGTCGCAACGTTGCGGACATTAGTTACAAGTTAGTAAATCGTCCGTATTTGTGCAACGTCTGATTGAAAATCGAGGTATTGTATTCCAGACCGGATTGTTTCTACAGACACTGgctggctaactagctaacgttacctagctaaaaAGTTTGGGTATCGTTTGAAAATGAAACGACAGGCCGGGAGGGACTCCAGTCCTAGTCGGGCTTTAGCGAAACGAATACGGGAAAGAGAGCGGGAACGAGACGGGCCACGGAGAGAGGACCTACCGCCCCCGCCTCTTGCCTTGCTGCTCGCTGAAAGCCGAAGGCAACATGCTCGGAGCAGGAGCAGGGAACGAGAAAAGACGCGGCTTCGGGAGGAGCGCGGGGCCGCTGGAGACCCACTTCACCACCGACAACAACACCACGACCTCGGTCTGATCGGCCGCCCCGCTCTCCGGACTACAGCCGCCCTGCCTAAAGGCAAAGCGGTGACCGAGCTACTGGGCCCCCGTGGGGGAGCGGTGGGGAATCTGGAATACAAATCGTTGCTCATTAGCAATCTAGGCTCGGTGCTTTCTGACGAACATGTTGAAGACGGACTGTTCCACGAGTTTAAAAAGTTCGGGGACGTTAGTGTGAAACTATCTCACACTCCAGAGCTGGGCCGTGTTGCGTACGTGAATTTCCGTCACCCGGAAGACGCTAAAGAGGCCAGGCATGCCAAGACCAGGTTAGTGCTGTATGATCGCCCCCTTAAAGTAGAGCCCATGTACGTCCGTCGTCGCAGCTGCACGCCGCCGGATGTGAGCTACATTCCCATTCATGGCGCTTCATATCCCCCTTATAGACAGAGGTCCCTCTCCCCGGGGGCAGGAGTTAGCAGTATCAGAGACATCCGAGCACTGAGACACTACCCTGTAGAGGGGTTGGGactgagcagagagagggagaggatcttaGATTACTACGGTATGTTGGATGAGAGGGGGCGGCCATACGGCCTGCCAGTACCCGAGCACGAAGACATAAAGCCAGAGGATGATGCGAGGGCGTGCAGGAACCTGTTCATCGGCAACCTGGATCACAACGTCACCGAGGGCGAGCTGAGGAGAGGCTTCGATAAGTACGGCATCATTGAGGAAGTTGTGATTAAACGACCGGCGCGCGGTCAGGGTGGAGCCTACGCTTTCCTCAAGTTCCAGAATTTAGACATGGCTCACCGGGCTAAGATAACCATGCAGGGCCGCGTGATCGGTGGGAACCCGGTGAAGATTGGCTACGGTAAAGCCAACCCCACCACGAGACTCTGGGTAGGTGGCCTCGGCCCTACCAACTCCCTAGCAACACTAGCCCGTGAGTTTGACCGCTTCGGCAGCATCCGAAACATAGACTATGTGAAAGGGGACAATTTTGCCTATATTCAGTATGAAAGCTTGGACGCCTCACAGGCCGCCTGTGCCCAGATGAGAGGTTTCCCCCTGGGAGGCCCAGAGCGGAGGCTGAGGGTGGACTTCGCCAAGGCGGAGGAGCCCCTGCCTCGTAGCTACCCAGCAGGGTACCAGCCCCCTGTGCCCCTGCCTGCCCACCTGGACTTGCTGCCAGAGGGTTACGGCGGGAGGCACCGCGACTGCAGCCTGGAGAGAGAGCTCCGTGCCAGGGACCGCTCGCCCCCCTCACACGCCCTGTTCAcccagcgggagagagagagggctctgctggacagggacaggggagacagagagttcacCAGCCCAACCAAGAGCCTGGAGCGTAGGGTGGGTGAAGCATTTGGGGGATCCCGTGGAGGGCGGGGGGACCGAGCAGCCCGGAGCCGCAGCCGAGAGCGCTGGCTGAAGGAGAGGGACGCAGCGCGGGCtgggggggagagacggagacgctGCAGTCCCTctcaggagaaggagagaggcaggtCCAAGGTGAGGGGAGGAGGACCAGCCTCTCCAGAGGACAGCCCAGACAGAGCCAGGGTCAGAGCCCCAGACTCCACCACCGAGCCCAGGGGACAGAGCCCCGACAGCAGCCGCCACTCCAACGAGGACCGGGGTGGGGGTCTGAAGACCGGCGGGGACAGGGAAAAGGAACGCGACCGTGACCGCAACCACAGAAATGTGAGCGACAACAACCACACATTGTCTGACACGCCTAATAAAGACCCTAAGACACTCAGTACGCTGTCGGAGTATGCTGCCACCCTCACCAAAGCCTGGCACGGTCACTTCGCCCTGAAGAACTCCTGCTTCCCCACTAACATGCACCTGCTGGAGGGAGGCTCCGGGTTCTTCCACTCTGTCATGAAGGACCACCAGGCCAAGGGGAAACTGACCCAGCTGAAGATCGCCCAGCGACTGAGGATGGACCAGACCAGGCTGGACGAGGTCACCAGGAGGATCAAGCATGGTGGCTCCGAGGGCTACGCTGTTCTCCTGGCCCTCCAGGGCCCCATCGACCGCGAGGCCCCTCCACCTGAACCAGGCCTACAGATCAGACTCCTTCGTCACCTGGTCACCTACCTGAGGAACAAGGAGGCTGCAGGAGTGATCAGTCTACCTGTAGGTGGGGCTAaggaggggggaaaggggggCATGCTGTACGCCTTCCCCCCCTGTGACTTTTCCCAGCAGTTCCTCCAGACCCCTCGCAGGACTTTGGAGAATCTGGATGAAGAGCACCTGGTGGTTGTGATTGTTTATGACTCTGCCTAACTAAGACAGACGTCACCTCTCTGTCTATAGTGTTAGCTGTCATTTATTTCCCCATGTCAACAACACACTGAGCTCTGAGCAAGGAAATAGTAGTGATTGTCAATAGCTAATTAAGTAAAACACCACTTTCTGTCTCTGTGGGGGGGTAATGGCTGTTTCACTTTCGTGTAAAGGGACTGAACTGTTATAGACAGacacctcatcctctctctggggggggggggggggggggggttcctatGTCCCTCTCTACGGAACTTATGCccctcacagacagtgtcactacAAACAGAGACTGAGCTGCTGTCACTCCAAGCAAGGGATCCTTTGAGACATACTGACAGACTTTGTATTTAAATACTGGAGGTATGACGGGACAGACATGTTGTCTGCATTTCTTTTAAGTGAAACACTACAACTGAGTGAGGGATTGTTTATTTTATTGGAACTAAACTGACCTGGCAGTATATCTAAAGGCTTCTTCTACAACAGGACTATGTGTCATATGatgtgattgtatgtttgttctTTTTATTTGACCATTCCAGAAGTTCCACCTTCATTTGAGAATTGTGTGCTCTGATTGGCTGTTGCATGCAGGAAGTTTGTTTTGTTGTACAGATTTTACCCTCCAACCGGTGGTCAAGTTCCACTCCTATTTACTGGCTATTGATTTTAAACCGTTGTTGTTTTGAAGTATTGTTTTAgctacagaaatgatttgttaaCGGTTCGGTCTTGGTCCTGATGTGGTAGTATACAGTTCATGGCTGGTTTAGTTTAGCTCTTTTTagctcttttattttatttttttaatgtactGAATGAGCCTAAAGCCTATTTGCGAATGATTTTGACATACTAGAGAAAAGGGTTGTCGGTCCTCTCTTGTTGATGCAACACTGATGCGGTTGTAAGGCAGAATGGGCTTCCTCTACCATATATTTAAatcatctgtttgttttttttttttttaaatcacaaaacATGCAATACAAATGAAATGCACCCACTGATATGTTGGAGTCAGTTCAATTTCTCCATGCTGTGTCTTTGAGCTGTGTGCTGTAACACGGAAGTACGTGTTCTATTCATCTATTAGTTTAGGTGCTTTaaacatgtctgtctgtttgaaTCATACTGGGCCATTTTAATGGTTATTTGAAGAAAACATCACCGGAATGAATGGACTAACTCTTGAGTAGTAGAATAGTTAAAATGAAAAGTGTTTGTCACTACATAACATCAGACTGGTGTTAGTTAAGATAACATAACATCAGACTGGTGTTAGTTAAGATAACAGAACATCAGACTGGTGTTAGTTAAAATGAAAAGTGTTTGTCACTACATAACATCAGACTGGTGTTAGTTAAGATAACAGAACATCAGACTGGTGTTAGTTAAAATGAAAAGTGTTTGTCACTACATAACATCAGACTGGTGTTAGTTAAGATAACAGAACATCAGACTGGTGTTAGTTAAAATGAAAAGTGTTTGTCACTACATAACATCAGACTGGTGTTAGTTAAGATAACAGAACATCAGACTGGTGTTAGTTAA

Function

GO: NA

KEGG:

id description
K13190 RBM15; RNA-binding protein 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU744465 lncRNA upstream 6324 82690163 ~ 82772049 (+) True G654983
TU744630 lncRNA upstream 140536 82637308 ~ 82637837 (+) True G655126
TU744610 lncRNA upstream 178545 82598823 ~ 82599828 (+) True G655106
TU744567 lncRNA upstream 211553 82516943 ~ 82566820 (+) True G655070
TU744532 lncRNA upstream 323653 82454080 ~ 82454720 (+) True G655040
TU744706 lncRNA downstream 89805 82872727 ~ 82876040 (+) False G655190
TU744707 lncRNA downstream 89805 82872727 ~ 82876040 (+) False G655190
TU744708 lncRNA downstream 89805 82872727 ~ 82876040 (+) True G655190
TU744726 lncRNA downstream 115823 82898745 ~ 82899477 (+) True G655206
TU744731 lncRNA downstream 119171 82902093 ~ 82902423 (+) True G655209
XM_021605169.2 mRNA upstream 330 82773777 ~ 82778043 (+) True LOC110525202
XM_036984223.1 mRNA upstream 13608 82354401 ~ 82764765 (+) False dock3
LOC118965402 mRNA downstream 372697 83155619 ~ 83155719 (+) True LOC118965402
XM_036984464.1 mRNA downstream 482614 83265536 ~ 83310372 (+) True LOC118965370
XM_021610760.2 mRNA downstream 771361 83554283 ~ 83616043 (+) False dag1
XM_036984238.1 mRNA downstream 772305 83555227 ~ 83616043 (+) True dag1
XM_021611193.2 mRNA downstream 928439 83711361 ~ 83712203 (+) True LOC110529053
TU744537 other upstream 318706 82459085 ~ 82459667 (+) True G655042
TU744236 other upstream 826981 81951002 ~ 81951392 (+) True G654782
TU744059 other upstream 969646 81767225 ~ 81808727 (+) True G654673
TU743930 other upstream 1202950 81574942 ~ 81575423 (+) True G654603
TU743539 other upstream 1427173 81326323 ~ 81351200 (+) False G654265
TU745825 other downstream 373092 83156014 ~ 83156319 (+) True G656125
TU745971 other downstream 484226 83267148 ~ 83272209 (+) True G656264
TU746281 other downstream 775915 83558837 ~ 83560518 (+) True G656551
TU747043 other downstream 1720627 84503549 ~ 84520418 (+) True G657228
TU747071 other downstream 1769074 84551996 ~ 84554773 (+) True G657254

Expression Profile