RNA id: XM_021611193.2



Basic Information


Item Value
RNA id XM_021611193.2
length 843
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC110529053
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 83711361 ~ 83712203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGTCTCTGGCTTCAGTATCCAATATCAAACAAACCCTTATTTCAATACATGACCTCAGGGGCATAGAGTTTGGCCACACTTTTCCTCGACATGGCCTGATGCTGCTCCACTGGCTAGCCAACAACATTCACACTGACAACAACGGCAACATGAGACTCAATTTCAACCCAACTAGGGGAGACTATGGCTTTAATTTCTATGGAAACGCTGACAGACCCCGCCCATTACCTTTTCTGCCCTCTGAAAGTGGTAGTTACTACTCATTAGGGAATATTGATGGAAATTACAACTATAATGGCACTACGGCACTTCCTGATTATGTCACTCAAAGCTTCTACAACTCATGGATacctgagagaaacagagacagagtcaTTATCAGAGTTAGGGAGGAAGGATCCAATCAGTTAATTGTAGATGAGGTCTACATCACACAGCATTACCCGCCAAATGAAAACAGAGGAAGTGTCTATGATCCAGACAATACATACCCTGTCAGTTTCAGCCTCAAGATCAACGACAACAGTGTGGAGAACATCTGGGGACACACACCTGGGCTGGCACTTCTTTTGGCAATTGCATTGTACTTGGCACGTCCCAAGGTCTCATTTATACAGCAAGTGTTTATTACCATGGAAAGCCAGCATCACATGCAGGATGATGAAACTAAATTGATAAAGCTTGAGGTGAAAACCACAAATAGAGGAGGTGCCAGGATCACCTTCAGTGGTATCCCCAGGAGGCTATTTGACAAGGGTGTGATTTGGGCACTTTATAAGAACAATGACAGTATGGACATGCTAGACTTTTCCTCAGTCATAGGGTGCCTCTGGGTCCTTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU746321 lncRNA upstream 89173 83620859 ~ 83622188 (+) True G656583
TU746318 lncRNA upstream 93837 83616773 ~ 83617524 (+) True G656580
TU746305 lncRNA upstream 122446 83588570 ~ 83588915 (+) True G656567
TU746280 lncRNA upstream 151737 83558428 ~ 83559624 (+) True G656550
TU746184 lncRNA upstream 217666 83493305 ~ 83493695 (+) True G656459
TU746521 lncRNA downstream 27952 83740155 ~ 83740369 (+) True G656760
TU746573 lncRNA downstream 77949 83790152 ~ 83790443 (+) True G656808
TU746575 lncRNA downstream 82396 83794599 ~ 83795035 (+) True G656810
TU746576 lncRNA downstream 83160 83795363 ~ 83795721 (+) True G656811
TU746645 lncRNA downstream 176969 83889172 ~ 83889915 (+) True G656871
XM_021610760.2 mRNA upstream 95318 83554283 ~ 83616043 (+) False dag1
XM_036984238.1 mRNA upstream 95318 83555227 ~ 83616043 (+) True dag1
XM_036984464.1 mRNA upstream 400989 83265536 ~ 83310372 (+) True LOC118965370
LOC118965402 mRNA upstream 555642 83155619 ~ 83155719 (+) True LOC118965402
XM_021605164.2 mRNA upstream 928439 82778373 ~ 82782922 (+) True LOC110525199
XM_036984240.1 mRNA downstream 47535 83759738 ~ 83782465 (+) False nicn1
XM_036984241.1 mRNA downstream 47535 83759738 ~ 83782465 (+) True nicn1
XM_036984494.1 mRNA downstream 88408 83800611 ~ 83802600 (+) True LOC118965393
XM_036984242.1 mRNA downstream 166139 83878342 ~ 83881586 (+) False LOC110528627
XR_005052683.1 mRNA downstream 166139 83878342 ~ 83881586 (+) False LOC110528627
TU746281 other upstream 150843 83558837 ~ 83560518 (+) True G656551
TU745971 other upstream 439152 83267148 ~ 83272209 (+) True G656264
TU745825 other upstream 555042 83156014 ~ 83156319 (+) True G656125
TU744537 other upstream 1251694 82459085 ~ 82459667 (+) True G655042
TU744236 other upstream 1759969 81951002 ~ 81951392 (+) True G654782
TU747043 other downstream 791346 84503549 ~ 84520418 (+) True G657228
TU747071 other downstream 839793 84551996 ~ 84554773 (+) True G657254
TU747111 other downstream 900626 84612829 ~ 84618717 (+) False G657292
TU747113 other downstream 902460 84614663 ~ 84618035 (+) False G657292
TU747353 other downstream 1294276 85006479 ~ 85007498 (+) False G657481

Expression Profile