RNA id: XM_036984242.1



Basic Information


Item Value
RNA id XM_036984242.1
length 978
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110528627
representative False

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 83878342 ~ 83881586 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CACATAACATAAATACCAGGTGTATTGGAGCTTGTTATCATCAGTTGCTTTTTCTCTGTTAGTACCACTCCTGTACCTGGCATCATGTGCATTTTGAGACTGACGGTGGTCACATTGCTGGCTACAGCTTGCTGCACACTAACAGATggagCAATCAGCATCACGTGTGAAGGCTCTGATGCTTTACTGCAATGTGATGGAGGTAAGATCCATATCAAGCGTGCGAACTACGGTCGTCGTCAACACGATGTGTGTTCTATTGGGCGCCCTGATCACCAACTCACCGACACCAACTGCCTCAGCCAATCCTCCACCAGCAAGATGGCAGAAAGATGCGGTGGGAAGAGCGAGTGTATTGTCCCTGCATCCAATTTCGTTTTTGGAGACCCCTGTGTCGGGACTTATAAGTACCTGGACACCAAATACTCCTGTGTCCAACAGCAAGAAACAATAAGCAGCATCATATGTGAAGGCTCTGATTCTCAACTACTATGTGATCGAGGTGAGATCCGTATTCAGCGTGCCAACTATGGTCGTCGTCAACACGATGTGTGTTCCATTGGGCGCCCACATAAACAACTCAAAAACACCAACTGCCTCAGCCAATCCACGACCAGCATAATGGCAGAAAGGTGTGATGGAAAGCGCCAGTGTATCGTCAAGGTATCCAACTCTGTGTTCGGTGACCCCTGTGTCGGAACCTATAAGTGCTTGGATGTGGCTTACACCTGTGACTGAATGATATCTTCCTGGTGAACGTGAAGATGTACAAGGCTTCTGGAATGTCTTCATCAGGTCGTGCTGTTTTCCTCCAACCTCTAAATCAACTTCAATGACCATTGTAAACCTATGTATATTGTGCTGAAGCTGTTCTTAAACAATTTCTGAATTGTGGTTGTTGTCTGACTTAAACGAAGCGGCAGGAAGACGATACTAGTTGCCTCTTGTACATCAATAAATGTCACCAATATTACTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU746576 lncRNA upstream 82621 83795363 ~ 83795721 (+) True G656811
TU746575 lncRNA upstream 83307 83794599 ~ 83795035 (+) True G656810
TU746573 lncRNA upstream 87899 83790152 ~ 83790443 (+) True G656808
TU746521 lncRNA upstream 137973 83740155 ~ 83740369 (+) True G656760
TU746321 lncRNA upstream 256154 83620859 ~ 83622188 (+) True G656583
TU746645 lncRNA downstream 7586 83889172 ~ 83889915 (+) True G656871
TU746652 lncRNA downstream 14577 83896163 ~ 83908491 (+) True G656878
TU746677 lncRNA downstream 60640 83942226 ~ 83942499 (+) True G656902
TU746679 lncRNA downstream 66856 83948442 ~ 83948667 (+) True G656904
TU746680 lncRNA downstream 67255 83948841 ~ 83949073 (+) True G656905
XM_036984494.1 mRNA upstream 75742 83800611 ~ 83802600 (+) True LOC118965393
XM_036984240.1 mRNA upstream 95877 83759738 ~ 83782465 (+) False nicn1
XM_036984241.1 mRNA upstream 95877 83759738 ~ 83782465 (+) True nicn1
XM_021611193.2 mRNA upstream 166139 83711361 ~ 83712203 (+) True LOC110529053
XM_021610760.2 mRNA upstream 262299 83554283 ~ 83616043 (+) False dag1
XM_036984465.1 mRNA downstream 490611 84372197 ~ 84401519 (+) True LOC118965371
XM_021610778.2 mRNA downstream 1023042 84904628 ~ 84909361 (+) True amigo3
XR_002474287.2 mRNA downstream 1412642 85294228 ~ 85297684 (+) True LOC110528638
XM_036984258.1 mRNA downstream 1419968 85301554 ~ 85363683 (+) False LOC110528636
XM_036984259.1 mRNA downstream 1419968 85301554 ~ 85363683 (+) True LOC110528636
TU746281 other upstream 317824 83558837 ~ 83560518 (+) True G656551
TU745971 other upstream 606133 83267148 ~ 83272209 (+) True G656264
TU745825 other upstream 722023 83156014 ~ 83156319 (+) True G656125
TU744537 other upstream 1418675 82459085 ~ 82459667 (+) True G655042
TU744236 other upstream 1926950 81951002 ~ 81951392 (+) True G654782
TU747043 other downstream 621963 84503549 ~ 84520418 (+) True G657228
TU747071 other downstream 670410 84551996 ~ 84554773 (+) True G657254
TU747111 other downstream 731243 84612829 ~ 84618717 (+) False G657292
TU747113 other downstream 733077 84614663 ~ 84618035 (+) False G657292
TU747353 other downstream 1124893 85006479 ~ 85007498 (+) False G657481

Expression Profile