RNA id: XM_036984252.1


Basic Information

Item Value
RNA id XM_036984252.1
length 3858
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110528641
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 85106971 ~ 85119900 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTACGTTGCGTCCGTCAATGTAGAAGAAGAGTATGACGCATGCGCATGTCACCTCGGACGTGATATTTGAAAGTTGTTGATATTTTCCGAGTTGGATGATCAATCTTTGAAAACATCAGGCTCCTTCAACCATGTCGTCCAGATTAGGAGGTAggtcctctcccatctcccctgTCCTGTTCCTGACGGTAGACGGTGAACCCATGCAATTCTTCCTACGCCCCGGTCCCACCAAGGTTCGACTGCAGCCCGTCATCAAGGCTGGTGGAGGCCTGGTGTGCAGGGCCCAGGAGCCTGGGGCTTTCCTACTGATTGACCCAGAGGAGATGGGGTCCGTTGCGGGTTCGGCAGCCCACTGGTACGTGTCCACCCAGTACATCCGGGACTGCATGGAGAAGAACCAGCAGCTGGAGGTGGAGGATTACCGCTTCAAGCCTGACAACGTAAAGACGAACGTCCAGACCAGGTCAGCGAAACAGAGCGTTGGTAGCATCGGACGAATGGGCTACACTCCGGAGGAGGATAAGGCCATTATGACGTACATCTGTGAGCACAAGCGTGAGTCGCATGGGAACAAGGTGTGGCAGGAGATGGCGAAGAATGGTCTGACCTGTCACAGCTGGCAGTCGATGAAGGACCGTTACCTTAAACAGCTCGTTAAAAGACAACCTGAGCCTCGGGACGGCAGGGGAAGGAACAAAACTGTCGCTACTGCTGCTtcggaggagaaaggagggaactcgtttgagaaagagagagagaaagacatcccACCACTGACTTCCTCACTTCAGAAAGACTCTCGACAGCCTGATATTATTATGCCGTTGGCCCAAGAGTCAGACGCCTCAAAGACTTCCTCTGAATCCAAACTCCCTcgggcatcatcatcatcatcagacactggTCTCCAACTCCCACAGAAGTCCCCTCAGAAAGACCAGGCTCAGTGCTGTCCTGAAGGACCGGGAACAGAGGAATCAACTGTGGAACCAGAGAGAGATCCCTCGACCCAGCTAGAGTCACCAGCAGACCCTGCCCAGTCTGACACTACAACACCCCAGCTGGTCCCTTCTAAGAGACTCCACCAGCCTTCTCCTCCTGggggcaaacacacacatccccagACTGAGGAGGCAGCAGCCACCCCCTCACTTAAAAGAGCCAGGTTAAATAGTGGAGCAGTGGTGGTGGTCTTGGAGAAAAGGGATTCAGCTGTTACgtcagGAGAGAAGGCAACAAGCTCCAACACGACAGAGGGGCAGCTGGGAAAGAAAAAGGCCAACAAGCGAAAACTGGGCATCCTCGAGAGTGCAGTGAGAGAATTCGAGGGGTCAGATGAGTCAGGGGATGAGGATGACGATGATACTCCAGACCTGGCTGAGATTGCTGGCCATGCACCAGTCCCAGGACGGGAGACTCAGACACCAGTAGCTGCCCCCCAGACAGAGAATAGCTCTGCTCAGATACAACCCCAGCTTGCTGCCCAAGAGAAGAGCTCAGAGACCCAGCCTGAGGGCCAACTACCTGAGGCCACTGGTCCCGCAATGAGTGGGTCGGCCCCAAATGCACCAACGGTCCCAAATGCACCTGCAACGAGTATCCATGTCCCGAAAGACCCTGCTATCCCGTCCACTTCGACAGTTCCTCACCTGTTCCTGTTTGAGCGTGACTCCCAACAGGCGGAGGAAGAGGAGCCTTCCCAGACCTTCACCCAACTCCAGCTCCAGGAGGCCAAGCGGCTGGTCCTCAGCCTGATGCGGGAATCCAAACTGGGGCTGGTCGCTGTCACCAAGGCGCTCCTGAAAAACAGTGGAGATGTCTCCGCTGCCCTGAGAGACCCACTGATGATGCCTAACGTAGGGAACGGGGTTCAGCAGGGCCCTCGATGGGAACGTCATGACGACCGCCTGCTGCTGTCAGCCGATCCTTCGGAACTCCAGAACAAGTTTGGGGAAGAGGGAGTGGCTAAGAGGATGGCTTTCCTTTATGCAGAGTGacactggaggggggggggttcaataGTATGCAACGTTGTGCGACCTTTAGTTCTGAACAACACGTttccaccccctcccccccccccaaaaaatgatacCAACCGTTCTTCAACATTCTTTGAGGTATGATTGTTCCTGTTTGGTCGGTGTGGCCTGATCAATATGGGTCCGACATTACCATTTTAAATCTCAAAATTTCATGCAGCCAGCACACCATAAACAATCGTACCTCTGGGCTAAcaatatttacaatgttgtttccTACTGATCGCGTTCCTGTGTTGTATTAACCAAATGGATAAAAACAGGAAGGACTACTTTAGCCCTTGATCGTGACTGgcagttctattctattataaaaTAAGAGTCCTGGGACGAAGGCGCATTCTGTACGGGAGAGTTTTGTCAAAGAGTTCCGACGCTCGGTCTGAACATTTAACGAGCATCGTTTTGCGGTACGGTTTTGGAAGCACAAGGACTTTATCTTTCATTTCAGCAAGAAGGCTAAATTCATACACACCTTTTATAGGGTTCACACAGGGCCGTGTCTCCATTTAAGCACTAGTTTAGGGAAAACATACGGaggacagagtggactacctgtgcTAGTTAGTTATCAGCGTCTCCGAACATCTGTGTGTAAATGGAAGATGACAAACggtgttgtcactgaaaaatactgtcggctgcaaCTGTGTTGAAACCGGTTAAAACGGAGTACAGTGTTTATTTTGTGTATTTTGCATTTgagaaattattttgatgtgatattaTAAAGTAGAGAACTTTTATTTTTCTATAACCGTACCTCAaattgagaatcgattcatgTTTCATTGGCCATTTTCCAGAGCCACTTCGTCTTTAAATAGAACACGTAACGTCATTGGACTATAAAGGAATAACATTGGGCTCCTTTAGTCTATTGTAGGGCtaggactacctgaacttgtccaacaaGAATAATAGTTATCAAAGTGTTATACAATTTTAAATCGTTGTCTTTCTCGTCTCTGACatgaaatgttatttattttattgattgattgtgGATGCTAATATAACCGTACAGTTTGTGCTTCAGGAAATGCCTTTGATCTTCATTCTGTTCCATTACATTGCACACTAATCATTGGAGGAAGGCATCTTCTGGAACGGGGGGAGTTTTGTTAAGTGTCCCCCGACACTCGGTCTGAACATTTAACACGCATCACTTATGGTACTGTTTTTGGAAGCGTAAGGACcttatctttaaaaaataaaaaattaattgaTACACACTGTTTTAGGGTTCCCACAATgccatatttccatgttacagagcttgtttacggaagacagagtggactacctgtgctaattagataGCTTCACCTCCTGTGTGTAAACGAtggacgccacaaacgtgttgtcactATAAAATATGGCCCGGATGCAACTGTGTTAAAACCGTGTAAGTGTGTATTTTGAAATCGTGAAATTATTTTTGGACgtgatatgaaagtagagggatttatgtttctagaaccgtaccgcaattgagaatcgattcacgtttagatggagtGTTTTGGCTGTTTTGGCTTCCAGGGCCACTTTTAACAGAACATGTTAGGTCCTTGGACTAAGGAGTAACATTGGGCTCATTATAGTCAGTCCATTATTGGGCTATGAAATGCCATGTCCCATGTAAGATGGCACATTTTTAACTTGTAATATTTTAACttttgtaatgtgtctgtttgGAATTTTTTTGCAATAGTAAACATGCTACATATGTGAAATATACTGTATGCATATGATGATTTGTGACAATCTGCCAATGTAATAAAATAACTGATGTAATTCGCTTCATAA

Function

GO: NA

KEGG:

id description
K11113 TERF2IP, RAP1; telomeric repeat-binding factor 2-interacting protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU748347 lncRNA downstream 19302 85087225 ~ 85087669 (-) True G658286
TU748328 lncRNA downstream 48194 85054242 ~ 85058777 (-) True G658274
TU748326 lncRNA downstream 48561 85053664 ~ 85058410 (-) False G658273
TU748327 lncRNA downstream 48752 85053664 ~ 85058219 (-) True G658273
TU748237 lncRNA downstream 157118 84898565 ~ 84949853 (-) True G658202
TU748411 lncRNA upstream 87857 85207757 ~ 85208924 (-) True G658331
TU748424 lncRNA upstream 110432 85230332 ~ 85231492 (-) True G658341
TU748360 lncRNA upstream 112661 85232561 ~ 85271192 (-) True LOC110529054
TU748442 lncRNA upstream 162519 85282419 ~ 85282699 (-) True G658355
TU748443 lncRNA upstream 163176 85283076 ~ 85283378 (-) True G658356
XM_036984248.1 mRNA downstream 275 84844331 ~ 85106696 (-) True LOC110529055
XM_036984249.1 mRNA downstream 513 84844331 ~ 85106458 (-) False LOC110529055
XM_036984250.1 mRNA downstream 513 84844331 ~ 85106458 (-) False LOC110529055
XM_036984246.1 mRNA downstream 774062 83954195 ~ 84332909 (-) False LOC110528632
XM_036984253.1 mRNA upstream 21324 85141224 ~ 85169972 (-) False LOC110528639
XM_036984254.1 mRNA upstream 21324 85141224 ~ 85169972 (-) True LOC110528639
XM_036984255.1 mRNA upstream 51218 85171118 ~ 85184654 (-) True gmppb
XM_036984257.1 mRNA upstream 81259 85201159 ~ 85263159 (-) False LOC110529054
XM_036984256.1 mRNA upstream 81259 85201159 ~ 85271190 (-) False LOC110529054
TU748303 other downstream 99466 85006726 ~ 85007505 (-) False G658255
TU748304 other downstream 99466 85006726 ~ 85007505 (-) False G658255
TU748305 other downstream 99466 85006726 ~ 85007505 (-) True G658255
TU747690 other downstream 1150203 83954247 ~ 83956768 (-) True LOC110528632
TU746415 other downstream 1490973 83608532 ~ 83615998 (-) True G656671
TU749640 other upstream 1040342 86160242 ~ 86160923 (-) True G659250
TU750071 other upstream 1512507 86632407 ~ 86633856 (-) True G659543
TU750481 other upstream 1883836 87003736 ~ 87007292 (-) True G659824
TU750588 other upstream 2165001 87284901 ~ 87293755 (-) True LOC110528667
TU752038 other upstream 3133163 88253063 ~ 88259405 (-) True LOC110528687

Expression Profile