RNA id: XM_036984254.1


Basic Information

Item Value
RNA id XM_036984254.1
length 2212
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC110528639
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 85141224 ~ 85169972 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAGGAAAATACCACTTAAATTCTATTGGTTGTgggatttctttttttttcttttttatttgCTGTGATTGGTTGGCATGAGTGTTCCAGGGAATCCCTCCAGCCAGTCATTTAAGCTGTCTGTTAGACTCATGTGGAGCAGAAAGTTCACAGTCCTCTGAAAAGGAGAGAGCTATCCAATACCTTTCACTTTGAAATTGTATCTCAGCCCTTCAACTTGAGCACTATGGATTTGACCTCCGGAATAGAGAAGATGTGTGTGGGGCAGCAGCCAGTGTTTCCAGTGGCGAGGGGCGCGACGTGTCTGTCATGTAAAGGGATCTGCTCTGGATTCATCCCACATTCCTGGAGGAAAGTGTGCACAGTGTGTGGTTGCAGTGTGGAGGACCACAGCTCCAGTTGTGACCTGGACGATGACCACAAGATTGGCCTACTCCTGGCCGACTCCAAATATGCCCACCTGACCGCCAAGGTGAAGGGCATCCGGGTGTACAAACGGAACCGCATGGTCGTCACCAACTCTGTGGTGTCCAGGAAGGACCCCACCTTCAACACCATCACCTACGACTGGGCCCCGCCAGGACTCACACAGAaactggCCATGCTGTACATGGCGTTGGTCCCGGAGGAGAAGCGTCCAGTAGCAGGGACGGAGGGAGCGATGTACCGGCGCAGGCAGTTGATGAGACAGCTACCAGTCTACGATCAGGACCCCTCCCTGTGCCACGGGTCTCTGTCAGAGGACCAGCTCCAGGCCATGTCTGTCTTCATGAAGCGCTACAAAGAGGAGGCTCTAGGAGTAGGGGAGGTGGCGCTGCCTGGGGAGGGAGGCGCTAACCCTCCGCCCGTCATCAAAGGACATAGGCAGAAGAACGGGGCTGTGACCGGGGGACCTAGGAAGGTCCCCATTATCCAGTCAGACCCTAACACGACCACCACCAACGGGACAGACGACCACTATAAGAAGAGTAAATACcattgCAGTGGTTGCTGGGAGCTCACCCCCCTGGACAGTCCTGTGGTGTATGCAGAGGGGGCAGGCTACGACAAGCAGTGGCACCCGACCTGCTTTGTGTGTTCAGAGTGTGGGGAGGCCCTGGTTGATCTGGTATACTTCTGGAAGGAAGGAGAGCTGCTGTGTGGAAGACACTACTGCCAGAGGACCAGACCCCGTTGTGCAGGCTGTGACGAGCTGATCTTCTGTGAGGACTACAAGAAGGGGGCAGATGGCCGGGCGTGGCACCAGGACCATTACTGCTGCTGGCGGTGTGGACAGAGTCTGGACAGCCCCTGTTCCTGCCCCCAAACAAACTGCCCCAGCACTGTTTAGGTCCCCTGGCCCCACTCCTTTCCCCCAGCCCTGTTTAGGTCCCCTGGCCCCACTCCTTTCCCCCAGCCCTGTTTAGGTCCCCTGGACCCACTCCTTTCCCCCAGCCCTGTTTAGGTCCCCTTGCCCCACTCCTTTCCCCCAGCCCTGTTTAGGTCCCCTGGCCCCACTCCTTTTTACCCAGCCCTGTTTAGGTCCCCTGGCCCCACTCCTTTCCCCCAGCCCTGTTTAGGTCCCCTGGCCCCACTCCTTATCCCCAGCCCTGTTTATGTCCCCTGGCCCCACTCCTTTCCCCCAGCCCTGTTTAGGTCCCCTGGTCCTAAAAATGTAATTATAAAtatgttaatatttaataataatgaTAAATTATAATATGCAATAATTCTTCTAAAATGTAATAACAGTGTAATAATAGTAAATCTGATTTTTTTTAGTTAAATTATAGAGAATAAATAAagataatttgtttgtttttaaaatgGCCGTTATTTGTGCTCTTATGCTAACAATTTGACCATTTCTGCCTCGTTGAAGTAGATGATTATGTTAATTTTAATCTAATTTAAGTAGTTATCCATTTTGTTTTAGTTAGTAGTTAATGTACAGTTAACCATTTTGTTGGTCTAGTTAGTAATTTAAGTACAGGTATCCATTTTGTTGGTCTAGTTAGTAATTTAAGTACAGGTATCCATTTTGTTTGTCTAGTTAGTAGTTAATGTACAGTTAACGATTTTGTTTGTCTAGTTAGTAGTTAATGTACAGTTAACGATTTTGTTGGTCTAGTTACTAATTTAACGATTTTGTTTGTCTAGTTAGTAGTTAATGTCCGGTTATCCATTTCCTACATGTACATTATAGATATTTGATGTTATAAAACTGTTTTG

Function

GO: NA

KEGG:

id description
K24417 LMCD1; LIM and cysteine-rich domains protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU748363 lncRNA downstream 26113 85114021 ~ 85115111 (-) False G658299
TU748365 lncRNA downstream 26161 85114021 ~ 85115063 (-) True G658299
TU748347 lncRNA downstream 53555 85087225 ~ 85087669 (-) True G658286
TU748328 lncRNA downstream 82447 85054242 ~ 85058777 (-) True G658274
TU748326 lncRNA downstream 82814 85053664 ~ 85058410 (-) False G658273
TU748411 lncRNA upstream 37785 85207757 ~ 85208924 (-) True G658331
TU748424 lncRNA upstream 60360 85230332 ~ 85231492 (-) True G658341
TU748360 lncRNA upstream 62589 85232561 ~ 85271192 (-) True LOC110529054
TU748442 lncRNA upstream 112447 85282419 ~ 85282699 (-) True G658355
TU748443 lncRNA upstream 113104 85283076 ~ 85283378 (-) True G658356
XM_021610776.2 mRNA downstream 21324 85106971 ~ 85119900 (-) False LOC110528641
XM_036984251.1 mRNA downstream 21324 85106971 ~ 85119900 (-) False LOC110528641
XM_036984252.1 mRNA downstream 21324 85106971 ~ 85119900 (-) True LOC110528641
XM_036984248.1 mRNA downstream 34528 84844331 ~ 85106696 (-) True LOC110529055
XM_036984250.1 mRNA downstream 34766 84844331 ~ 85106458 (-) False LOC110529055
XM_036984255.1 mRNA upstream 1146 85171118 ~ 85184654 (-) True gmppb
XM_036984257.1 mRNA upstream 31187 85201159 ~ 85263159 (-) False LOC110529054
XM_036984256.1 mRNA upstream 31187 85201159 ~ 85271190 (-) False LOC110529054
XM_021610771.2 mRNA upstream 205622 85375594 ~ 85388068 (-) True ube2j2
XM_036984261.1 mRNA upstream 222883 85392855 ~ 85551719 (-) False LOC110511195
TU748303 other downstream 133719 85006726 ~ 85007505 (-) False G658255
TU748304 other downstream 133719 85006726 ~ 85007505 (-) False G658255
TU748305 other downstream 133719 85006726 ~ 85007505 (-) True G658255
TU747690 other downstream 1184456 83954247 ~ 83956768 (-) True LOC110528632
TU746415 other downstream 1525226 83608532 ~ 83615998 (-) True G656671
TU749640 other upstream 990270 86160242 ~ 86160923 (-) True G659250
TU750071 other upstream 1462435 86632407 ~ 86633856 (-) True G659543
TU750481 other upstream 1833764 87003736 ~ 87007292 (-) True G659824
TU750588 other upstream 2114929 87284901 ~ 87293755 (-) True LOC110528667
TU752038 other upstream 3083091 88253063 ~ 88259405 (-) True LOC110528687

Expression Profile