RNA id: XR_002474287.2


Basic Information

Item Value
RNA id XR_002474287.2
length 2876
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC110528638
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 85294228 ~ 85297684 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTtttattctctctcacacacattcacgGATAAAGTTTAGGCATCGAATAGTTGGTTCCTGGGCTGTAAACCTCCCAACTTCCTGATCCATGCTCCAAaggacagatctaggatcagctcaccCTCGTCAAATCCAAACCAGGACCTTAATAATCCACAAAGGGGAAAACGGACCTGAGACCAGCATTTAAACCCCACGTCTTCCTGTCCAGACACTGCTCTCCATCCAGAGTTCCTCCTGTGCTCCAGCTGTCCATCCGtctatccatccattcatccctccacaCCCCAGCCAACCAGCCATGGGTCTGATGAGTGAAGACATGAATTGTTGCGTCTGCTTCCAACCCTACTCTCGCAGGGAGAAAATCCCTCGGGTGCTCCACTGTGAACACACCTTCTGTGGGCCGTGCTTGGAGACAATCTCCAGGCTCCAGAGTGGCCTCCTGACCGCGTGCTGCCCTCTGTGTCGCTGGATCACCTGTAGCCAGGTCAGCCTACCCTTTGCTGGTTCTCTGGTTGTCAACACTGAGATCTGGGACCagatagcagacagacaggaggaagaggaggagatggaggcgtGGATAGGaaataacagacagacacagacctcCACACAGTACAAATGCTCTTCATTGGGGCATTCTGGTGTGAGGATCAAGCTACAGAGTTTCTGGAGGAGAATGAGGCACAGTGGTCAGAGAGCACTAAAAGAAGGGAAGAAATGAAGGTCTTGGTTGTGTTTTGATAGATGATGTCACCGTAGTAGTCTAGGACAGGAAGCAGCAGTTGGGATACCAAGGTCTTTCTTTTTCAGTATTTATTTGTTATATTTTATACAATATACGGTCTACAATCTTTATAATCAAAACAAATATGTCACCTTTATTTCAACATGTAGTTTTTTTGAGACCTAGTTTCTCTTTTTCAAATGAACCCTGTAATATGATTGTCCCTATATGTCTGAAGTGCATATTTTTTGTACTCAAGTGATATTTATTGCTATGATTGTAAAATAAATTAATCTGCTTTAAAATAACTGTCTTCTAGTTGTGAAATCACGCTGGTGCaatcaattctctctctctccctctccctctggttTGAGGAACTATTATTGTAGTAACAGCAAAATAAGCTAATGTTATTGTACCCGTAAGTGTGTTGTAATTCGCAACAATATCATAGAATTACGTTACATTCGCTGCCATGTCATTGTTATGCCACTGGGGTTAGAAAGCTTGTATCCATGGTGCGACAGCTCTTAGTGTAATTACGGTATAGGTGCGACAGCTCTCACTGTTATAACGGTATAGAGAATTCAGAGTTAAGGGTTTATAAAGGACGTCGTTTGttcggtaaaaaaaaaaaaaaaacagtcaggAACCTTCTGCGATAATTGTGCACATTTTCATAATTTTCGCCCTAATTGTTAATTTACAAAGTATACGGGACTGGACTTTTATTCTGAAGGATTACATAAATCCGTGACCCCGGACCGGAGATGCAGGAAAAACAGCTGATTCTTGAGAAGTGAAACTGAAAGGGGGAAACCTAAAGGTGATGACAGACGGTTGGTCCACAGACAGAACAATGtgccagatatttcaccggatgaaTAAATGTGAAACATCTGATTGGCGTTTCCTCTCACTGTTTCCAAAATCAGAATCTCTCTCTAGTTTAAACAGActgatttttatggggatttttttcaTAATGCCAATTAGATTTCCAACTGCGCGCGGACATCGACTTCAGTTAAAACCACTACAATGACAAGGCACGTTCTCAGATAGGGGTCTAGAAGTGCTACCCTCCTCCAGTGAAAATACCCCTACAAAATAAGATTGATCTATTTTAGATATCGGTGACCAAAAACTGGACATGTGTGTCGTTTTTAGACATGAATACCTGTTCCCTAAATGTCTCTGCAAGGGCCTGACAAAGAGGATTCCATCAAAGCATTTCCTGGAAGAAATAAAACATGGCGTGAATTCTCCACAAGTGTTGACAATTCTGTGTTTTTGGACTTCCATGGAACTAACCTGCGTCACCTGAGAGCGGAGGAGGTGAGAGACCGCCCCTTAtgaaacaagaaaaaaaaaaaaagtatctttattttactaggcaagtcagttaagaacaaattcttattttcaatgacggcctgggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtttgaacttgcaaccttccggttactagtctaacactctaaccactaggctaccctcacCTTCGCAGTGGCTTAAAAGCACAGGTAGACAATGTTGcaagggttcccaaacttttttgcCCTACGACCCCAAATTCTTGTGACCTCAACCATGTGAAAAAATGTGGTAATTAAATGCACTCAAAtaataattaaattaaattaaatgcaCTAAAATGCACTCATTCTAGCAGgatttctgattgtcttctcaactcaaatcaaatcctatgtgtcacatgcgccaaatacaacaggtgtagtagaccttccgttgaaatgcttacttacaagccccttaacaaacaatgtagttcaagaaatagagttaagaaaatatttactaaataaactaaatgtGGGGCTTTGGCAGTCAATTGTAAAACATTctaactgtatttctgatttgtCTTCTCAACTCACCATCACATACTGTTCATGTGGGGCTGTGACAGTCAATTGAAAATGAGTCTGACACAATGTGTCTTATCTCACCATCTCGTtttcatgatggggtattgtgatgtcatgatggggtattgtgatgtcatgatggggtattgtgatgttattatggggtattgtgatgtcattatgggttattgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU748456 lncRNA upstream 5575 85288451 ~ 85288653 (+) True G658362
TU748454 lncRNA upstream 8348 85285111 ~ 85285880 (+) True G658360
TU748453 lncRNA upstream 9223 85284500 ~ 85285005 (+) True G658359
TU747564 lncRNA upstream 36554 85256990 ~ 85257674 (+) True G657643
TU747544 lncRNA upstream 74787 85219043 ~ 85219441 (+) True G657623
TU748459 lncRNA downstream 2234 85299918 ~ 85300437 (+) True G658365
TU748465 lncRNA downstream 5724 85303408 ~ 85305131 (+) True G658369
TU748467 lncRNA downstream 12637 85310321 ~ 85352511 (+) True G658370
TU748492 lncRNA downstream 69343 85367027 ~ 85372293 (+) True G658392
TU748485 lncRNA downstream 77917 85375601 ~ 85377611 (+) False G658386
XM_021610778.2 mRNA upstream 384867 84904628 ~ 84909361 (+) True amigo3
XM_036984465.1 mRNA upstream 892709 84372197 ~ 84401519 (+) True LOC118965371
XM_036984242.1 mRNA upstream 1412642 83878342 ~ 83881586 (+) False LOC110528627
XR_005052683.1 mRNA upstream 1412642 83878342 ~ 83881586 (+) False LOC110528627
XM_036984243.1 mRNA upstream 1412642 83878390 ~ 83881586 (+) True LOC110528627
XM_036984258.1 mRNA downstream 3870 85301554 ~ 85363683 (+) False LOC110528636
XM_036984259.1 mRNA downstream 3870 85301554 ~ 85363683 (+) True LOC110528636
XM_036984264.1 mRNA downstream 254109 85551793 ~ 85617509 (+) False pusl1
XM_036984263.1 mRNA downstream 254109 85551793 ~ 85617931 (+) False pusl1
XM_036984265.1 mRNA downstream 254109 85551793 ~ 85617931 (+) False pusl1
TU747353 other upstream 286730 85006479 ~ 85007498 (+) False G657481
TU747351 other upstream 286730 85006580 ~ 85007498 (+) True G657481
TU747111 other upstream 675511 84612829 ~ 84618717 (+) False G657292
TU747113 other upstream 676193 84614663 ~ 84618035 (+) False G657292
TU747071 other upstream 739455 84551996 ~ 84554773 (+) True G657254
TU749085 other downstream 588908 85886592 ~ 85887121 (+) True G658885
TU749087 other downstream 598142 85895826 ~ 85896149 (+) True G658887
TU749391 other downstream 1111018 86408702 ~ 86412585 (+) False G659058
TU749484 other downstream 1223376 86521060 ~ 86521822 (+) True G659136
TU750287 other downstream 1802780 87100464 ~ 87102270 (+) True G659706

Expression Profile