RNA id: XM_021610771.2


Basic Information

Item Value
RNA id XM_021610771.2
length 4007
RNA type mRNA
GC content 0.46
exon number 7
gene id ube2j2
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 85375594 ~ 85388068 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaatataaaaataaaagttCATTGTTTGTGCTGCTGGCAGGATAACGTTACTAGTCCCAAAACGTCGGTGTTTGTTTTTTTAGTAGCCCGTATTCACGATTtgtggaagaagaaaaaaacgacGACTCACCATCGAGTCTTTCCACGAAGAAAGAGGAACTCTCTGCCTGTAGATGAACAACCACGGGAATAAGAGGGCACCGACCACAGCCACCCAGAGACTAAAGCAGGACTACCTCAGGATAAAGAAAGACCCTGTGCCTTACATCTGTGCTGAACCCCTACCATCCAACATCCTCGAATGgcacTATGTTGTTCGAGGTCCTGAGAAAACTCCATACGAAGGGGGATATTATCATGGCAAACTAATATTCCCTCGGGACTTCCCCTTTAAACCACCCAGCATCTACATGATCACACCTAACGGGAGATTTAAGTGTAACACACGgTTATGTCTGTCCATCACTGATTTCCACCCGGACACGTGGAACCCAGCCTGGTCCGTCTCCACCATCCTGACTGGTCTGCTCAGCTTCATGGTGGAGAAAGGCCCTACTCTGGGCAGCATCGAGACCTCTGACTACACTAAACGACAGCTGTCAGCCCAGAGCTTGGCTTTCAACCTAAAGGAGAAGGTTTTCTGTGAATTGTTTCCTGATGCCGTTGATgagaTAAAGCAGAAACAGAAGGCCCAGGAGGAGTTGAGTGCccgtcccctccccctccccgacGTGGTTCCTGACGGCGACCCTCAACACGGCAACTACGGAATCCCCGCCCTCAACGGAGGCCACGGCCCTCTGGGCCCCGCTAACCCCGCCCCCGGCCTCCAGCAGGCCAATCGGAACCACGGACTGCTGGGCGGCGCCTTGGCCAACCTGTTTGTGATTGTAGGGTTCGCGGCGTTTGCCTACACGGTGAAGTACGTGCTGCGGAGCATCGcccaggagtgagagaggagaggatgaaggagagCAGAGGGTCAGCTACAGGACTATTGTATGATTTAAACACATTATTGATAGAAATTCTGAGCCACCCCCCTGAAGGAGGGCTGGGGAAGCAGGTGGGGGGGGTTTGGGGGGTGACTGGGACAGGGTTGTTTGGGATCACGGTTGTTGATCCACTCTGTGCTTTCGGTGGTTATGACCTAATACCCGGTAGAAGAAGTGCTTGGCTCATGGGTTGACCGCTGGCTCAGAACATTTTCAAGTAATTGTTGTTCTCTGCCTATTTACTCTGAAGCCACTGTATTGTTAGTGTTCTGTGTGCTAGATACATTTTCAATCTATTGTGCCGCCATATTGGTGGGTCCCTGTAAAAAcacaaaagaaaaaaaaaaaaatatcatgtGGATTTTGGAACCATGTTTTCATTCTGCCTGTTCCAGTTCCACAAAGTATGTCTTAAGTGGGGATAGATAGCCCTCTGTTGCCCGGGAAACAAGGTTCAGACTCACTTGGGTAAGTGTTGCCCTTCTGTCCTGTGTCACCTTCGACAGGTAAGACAGACTCCACCCCCCCCTGAGTCCTAAATCAgttgtcactgtgtgtgtttagCAAATACAACAAGGTAGATTATTGTgccccaaatggccccctattccctttgtagtgcactacttttgaccaggacctatagggctctggtctaaagtactgcactatataggggatcgggtgccatttgggacaccggctcagtcagtctgtctgctgTGGCTTTTTCCCAAAATGGctgaccccccctcccctctgggTGTCTTCTTCAGAATGGGTTCATGATACCATTGTCACTCTTCATTTACCTTCTTGTCTGGTTTAAACCATATACACGACTCGCAGGTTTGGCCCGTTTTAAATCACTGACAATGCTGTCCTTTTTTTTATGGGGTTATTAGTTGCAAAATAAGGGGGTTGTAAAGGATAATGAGGAAGTTGGTTGAAATGACGTCACATAAGAATGGAAAACCCAGGGAACTGAACCGCTTAGCTGGCCTTAgagcatgttgtctgtctgtgtcttttaCAATGCTACTGACCCACTCAAACATTTTGAAAAGAGAAGTATGGACATGGTGGATGGGTTAACTACAGTAGTGGAATAATTAGGTTATAAATAGTAACCTATTTAAATAGTTATCCCAAGGCAGTTGATTCTGCCTATATACATTTAATTCTACTGAAACAAAAATATGAACTCGACATGTAAAGGGTTGGTTTCATAAGATGCCAGACCGGTTCCATATGTACAAGTGTTTTTCAAAAATGTtgggcacaaatgtgtttacatccttgttagtgagcatttcttcttttgccaagtggcatatcaagaagctgattaaacagcatgatcattccacaggttcaccttgtgctgggggggcAATAGAAGGCCACTCTCTAaactgtgcagttttgtcacacaaagcaatgccacagatgtctgaagttttaagggagcgtgcaattggcatgctgactacaggaatctCCACCAGAGTTcctgccagagaattgaatgttcaattctctaccataagccgcctcaatgTCGTTTTTTTgttttggcagtatgtccaaccggcctcacaaccacagaccgtGTGTAACAACGCCAGCCCGGGATCTCcacatcgtctgagaccagctacccggattgctgatgaaactgagtatttctgtctgtaataaagcccttttgtggagagAAACTCATTCTGGTTGGCTGGGCCTGGCACCCAAGtggggtgggcctatgcccacccatggctgcgcccctgccaaGTTAGGTGAAatgcatagattagggcctaatgaatttatttcaatttgattgatttccttatatgaactgtaactcagtgaaattgttgcatgttgttttTTTCAGTATAGCTAAATTCCCCATCTTAAAATACCATGTCAACCTACCTGTGTGTTTTGGTATAGCTGATATCTGTTTATGTTTGGGTGAGTTTCAATATGTGCTGTGGGTCATTAGGCTTGTCTTTAAACCATGACAAAGGACATCAAAAAGACAGACTGCATCTGACTAGAGCACTAAATAGGAAATGGGGTAGGAGATATGAGTTGACTCGTCTCTCGGCTGGTGTTTTGTTGTCAGTCAACCCAACCCGTGAGCCAAGGCAGTTAAGTCCAGCGCTGTCAATCTCCCATGTTGCGCTGAGACGGGGGATCTCCAATGTGCTTAgctgacctttttttttttacaacacatCGCTCTATATAGGCCCCaatgaggagacaacagtctatataggccccaatgaggagacaacagtctatataggccccaatgaggagacaacagtctatataggccccaatgaggagacaacagtctatataggccccaatgaggagacaacagtctatataggccccaatgaggagacaacagtctatataggcCCCAATGAGGAGACAACAGCACATGGAGAGGTAAACCTTTGTGTTAAATATggatatattattttatataatAGTAGCCATGGTGTGGCAGTCTGTTAGATCGGGAACCAGCTTTCTTGTCCCTGGCAGTGTacaaaatggcaccttattccatgTCTTGttcgctacttttgaccagagcctttgCAAaggtataaggaatagggtgtcatttgggacacatcccgtCTTGCCAAACAGGACAGGGCTGAGAGTAGAGCTGGTTAGTGTGAAAAAACACCAGCACCTCCCTGGCTAGTAGAATTACTCATTTACATTGCATTTAGTGCAGATTGTTCTACAGTGTAGCCTACttttgacttcaggaagcagaagGAAAAAAATACGTTCAGATAATAGCAGAAGACTTGAACAAAGCTCTTTTTTGTCTCTTGTTCTGGCCCTTTTTTTTAATGATAGTTCATTTGAGATGCACAGCAAAAACACACAAATTCCAGGCTTCATAATTATCTCGTTTTGAAATTGTATGTTTTCATAGTTAATGCAAATAAATGTACCCCGCCATTTTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K04554 UBE2J2, NCUBE2, UBC6; ubiquitin-conjugating enzyme E2 J2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU748812 lncRNA downstream 18457 85356690 ~ 85357137 (-) False G658665
TU748813 lncRNA downstream 18457 85356690 ~ 85357137 (-) True G658665
TU748800 lncRNA downstream 32243 85339584 ~ 85343351 (-) False G658656
TU748801 lncRNA downstream 32243 85340700 ~ 85343351 (-) False G658656
TU748802 lncRNA downstream 32243 85340700 ~ 85343351 (-) True G658656
TU748829 lncRNA upstream 34445 85422513 ~ 85424262 (-) True G658681
TU748836 lncRNA upstream 51943 85440011 ~ 85441863 (-) True G658685
TU748868 lncRNA upstream 170933 85559001 ~ 85560774 (-) True G658716
TU748911 lncRNA upstream 192974 85581042 ~ 85582030 (-) True G658755
TU748918 lncRNA upstream 198321 85586389 ~ 85590860 (-) True G658760
XM_036984256.1 mRNA downstream 104404 85201159 ~ 85271190 (-) False LOC110529054
XM_036984257.1 mRNA downstream 112435 85201159 ~ 85263159 (-) False LOC110529054
XM_036984255.1 mRNA downstream 190940 85171118 ~ 85184654 (-) True gmppb
XM_036984253.1 mRNA downstream 205622 85141224 ~ 85169972 (-) False LOC110528639
XM_036984254.1 mRNA downstream 205622 85141224 ~ 85169972 (-) True LOC110528639
XM_036984261.1 mRNA upstream 4787 85392855 ~ 85551719 (-) False LOC110511195
XM_036984260.1 mRNA upstream 4787 85392855 ~ 85551720 (-) False LOC110511195
XM_036984262.1 mRNA upstream 13002 85401070 ~ 85551717 (-) True LOC110511195
XR_005052684.1 mRNA upstream 169839 85557907 ~ 85558332 (-) True LOC118965326
XM_036984267.1 mRNA upstream 376570 85764638 ~ 85855852 (-) True atg7
TU748303 other downstream 368089 85006726 ~ 85007505 (-) False G658255
TU748304 other downstream 368089 85006726 ~ 85007505 (-) False G658255
TU748305 other downstream 368089 85006726 ~ 85007505 (-) True G658255
TU747690 other downstream 1418826 83954247 ~ 83956768 (-) True LOC110528632
TU746415 other downstream 1759596 83608532 ~ 83615998 (-) True G656671
TU749640 other upstream 772174 86160242 ~ 86160923 (-) True G659250
TU750071 other upstream 1244339 86632407 ~ 86633856 (-) True G659543
TU750481 other upstream 1615668 87003736 ~ 87007292 (-) True G659824
TU750588 other upstream 1896833 87284901 ~ 87293755 (-) True LOC110528667
TU752038 other upstream 2864995 88253063 ~ 88259405 (-) True LOC110528687

Expression Profile