RNA id: XM_036984261.1



Basic Information


Item Value
RNA id XM_036984261.1
length 5308
RNA type mRNA
GC content 0.49
exon number 26
gene id LOC110511195
representative False

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 85392855 ~ 85551720 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CACCGATCTCGGCATCCGTGGACGTAGAGTAACAGCAGCCGTAGTAATTTGACATGCATTGAGACCACATTCTGTGCCACCGTGACAGAAGAAGCTGCTGCTGCCGCGCGTCCGACGGAGAGGGAATACTGCAACTGTACCGGACTCGTTTCATCCAACCGTTTATAACGACAGCAGCCCCGGGCAATGACATTAACCTATTGAAAGAGGAATACTAGCAGGAAAAAGGCAAAGATGACGGTGGACTTTGAAGAATGTATTAAAGACTCTCCGCGATTCAGGGCTGGCATCAATGAGGTGGAGACGGATGTGGTGGAGATCGAAGCTAAACTAGATAAGCTGGTGAAGTTATGTAGCGGTATGATCGAGGCGGGCAGGGCGTACGTAAGTGCCAACAAACTGTTTGTCAACGGCATCAAAGACTTGTCTCAGCAGTGCAAGAAGGAAGAAATTATCTCTGAGTGTCTGGAGAAGTGTGGGGAGAGCCTGCAGGAGATCGTCAACTACAAcatgATCCTATTTGACCAGGCCCAGAGGTCAATCAAACAGCAACTGCACACCTTCATCAAAGAgGACGTGCGTAAGTTCAAGGAGACAAAGAAGCAGTTTGACCGTGTGAGGGAGGACATGGAGATAGCCCAGGTGAAGAACGCCCAGGCCCCCAGGAACAAACCTCACGAGGTGGAGGAGGCCACTTCCTCTCTTACCCTGACCAGGAAGTGCTTCAGGCACCTGGCCCTGGACTACGTACTGCAGATCAATGTTCTTCAGGCTAAGAAGAAGTTTGAAATCCTTGATGCAATGCTGTCGTTCATGCGAGCCCAGTACACCTTGTTTCAACAGGGCTATAAAATATTGGATGAGATTGATCCCTACATGAAGAAACTAGCtgcagagCTGGATCAGCTGGTCATTGACTCAGCCATGGAGAAGAGAGACCTGGAACACAAACATGCTACCATACAGCAGAGGACTCTGATGGAGGACTTCTCCTATGATGATAATAAGGTGGAGTTCAACGTGGACGCTCCTAACGGAGTGGTGATGGAAGGTTACCTGTTCAAGAGGGCCTCCAATGCCTTCAAGACCTGGAACAGacgGTGGTTCTCCATACAGAACAGCCAGCTGGTCTACCAGAAGCGACTTAAGGATGCCCtgacggtggtggtggaggacctGAGGCTGTGTTCAGTCAAACCTTGCGAGGACGGAGAGAGGAGGTTCTGCTTTGAGGTGGTGTCCCCCACTaaGAGCTGTATGCTCCAGGCAGAGTCAGAGAAGTTACGGCAGGCCTGGATCCAAGCTGTACAGGCCTCCATCGCCTCTGCATACAGAGAGATATCAGACAACTACTACATCGAGcgtCTGGACCGGACAGCCTCCCCCTCTACCAGCAGTATAGACTCAGCCAGCGAGCCCCGCGGGGAGAaatgggggagagggggtgagggcaGGGGGGAGAGCATCCTCCACCGGGTGCAGACCCTCCCGGGTAATGAGCTGTGTTGTGACTGTTCCCAGGCTGCACCATGCTGGGCCTCCATCAACCTGGGAGTCCTGCTCTGCATCGAGTGCTCTGGCATACACAGGAGTCTAGGGGTTCATTGCTCCAAGGTTCGTTCACTAACACTGGACTCCTGGGAACCAGAGCTACTCAAGttgATGTGTGAGCTGGGTAACAATGTGATTAACCACATCTATGAGGGAGCCTGTGAGGAACTGGGAGTGAAGAAACCTGGACCTTCCAGTCCTAGacaaGAGAAGGAGGCGTGGATCAAGGCTAAATATGTGGAGAGGCGTTTCCTGAAGAAGATGAGTGTCAGTGACTCATTGGTGGAAGGCGAGAGGAAGTCCCGCCCCTGGAGCGTGAAGAAGTGTCATCGCCACAACAGCTCCATGCGAGGAGCGCCCAAAACCCGCCGGAAATACCGACACGACCCCGGTTTGATTTCACCAGGAAACCTCTCCGCAGCTGCAGCAGCAGCGAAGCTCCGTCGTGACTCTCTGTTTTGTCCTGATGAGATGGACAATCTCTTCTCCTACTTCGACACTGGCAATGGAACCCGCAGCCCTGCAGGTCTGAGCAGCGACAGTGGGCTGGGAGGCAGTACAGACGGGAGCACAGACATCCTGGTGTTTGGCTCAGTGGTCGACAGTGTCACCGAGGAGGAGTGTGAGGGTGAGTCAGAAGAGGAGGAGTCTAGCGGGGAGGTGGAGATAGAGCAGGAGGCGGGATCAGACCCTGAGGAGCCCCTCCCCCCGGGGGCGTTGCTCAACCGGTCGTCACGGCTACACAACCTGCCACTCATGGCCGAGGCGCTGGCGCACGGGGCAGACGTCCACTCTGCCAGCGATGAGGAGGGAAAGACCCCGCTCATACAGGCCGTGACAGGGGGCTCTCTGACAGCGTGTGAGTTCCTGCTGCAGAATGGGGCTGATGTGAACCAGAGGGACATGGGGGGGAGAGGACCCCTCCACCACGCTACCTACCTGGGACATACAGGtcaggtgtGTCTGTTCCTGAAGAGAGGAGCTTGTCAGACAGAGGTGGATGAGGAAGGTCACGACCCTCTGAGCATGGCTGTCCAGGCCGCTAACGCCGATATTGTTACACTgttGCGGTTAGCACGGATGAACGAGGAGATGCGCGAGGCGGAGGGTCCGTTTGGTCAGCCAGGCGTTGCCATGGGGACCAGCAGGAAGGTAAAACGCAAGGATAGTGTTCGGGATAGAGTAACACAACATATCACATCTTTCGGGAGTTCTCGCTCATGGCGTCCCACCAGCCCGAGAAGCTAAAGAGGAGAATACACTTCAACAACTGCCAGACGTAGTCCATGATGACATCAAAACATACTTCAGCCACTGCCTGAGGTAGTCAAAGACTCCTAACTTGACTCAGACTCTGAAGTGACTTACTAACAAGTCTCTGTGTCCTACACCTGAGATCTATTTAGGTAGAGCACCGCCACCAAGACAGATCTATTTAGGTAGAGAACCACCACCAAGACAGATCTATTTAGGTAGAGAACTATCAAGACAGATCTATTTAGGTAGAGCACCATCAAGACAGATCTATTTAGGTAGAGAACCACCATCAAGACAGATCTATTTAGGTAGAGCACCATCAAGACAGATCTATTTAGGTAGAGAACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACAGATCTATTTAGGTAGAGCACCACCATCAAGACCACCATTTTTCTTCAATCAGTTTTGATATAAACGTTTCAGTGGGTGTCCTGGTGTTCTCCTAGGCACGCGATCATTGCTCTCAGTTCCATTGCATTACACAAGAGTCATTGGACGAAGGCGTCTTCTGTACGGGAGAGTTTTGTTAAGAGTCGCGACGCTCGGGCTGAACATTTAACGAGCATCGTTTTGCGGTACGGTTTTGCAAGCATAAGGACCTtgtcttacatttttttttaaaggttaaaTTGAAACACACCTTTTATAGGGTTCACACACGGCCGTGTCTCCATTTAAGCACTAGTTTAGGGAAAACATACGGaggacagagtggactacctgtgcTAGTTAGTTATCAGCGTCTCCGAACATCTGTGTGTAAATGGAAGAAGACAAACggtgttgtcactgaaaaatactgtcggtTTAACGTTAGTAACGTTAGGTTTCTTTAGTTTATTATTGGGCGATTGTAACCCTTAGTTAGGGAGAGTGAAAAATAGCCATTTCAATTCATGCTTGATTTGTGTTACTGTTTGTACAGACACACGCAAAGGTACAAACACATGCATACTGCATACATTATGATATTGTTGTGTGGTGGTATTAAacattttgtactgta

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU748812 lncRNA downstream 35718 85356690 ~ 85357137 (-) False G658665
TU748813 lncRNA downstream 35718 85356690 ~ 85357137 (-) True G658665
TU748800 lncRNA downstream 49504 85339584 ~ 85343351 (-) False G658656
TU748868 lncRNA upstream 7282 85559001 ~ 85560774 (-) True G658716
TU748911 lncRNA upstream 29323 85581042 ~ 85582030 (-) True G658755
TU748918 lncRNA upstream 34670 85586389 ~ 85590860 (-) True G658760
TU748944 lncRNA upstream 56243 85607962 ~ 85615226 (-) True G658781
TU748920 lncRNA upstream 65814 85617533 ~ 85618534 (-) True G658762
XM_021610771.2 mRNA downstream 4787 85375594 ~ 85388068 (-) True ube2j2
XM_036984256.1 mRNA downstream 121665 85201159 ~ 85271190 (-) False LOC110529054
XM_036984257.1 mRNA downstream 129696 85201159 ~ 85263159 (-) False LOC110529054
XM_036984255.1 mRNA downstream 208201 85171118 ~ 85184654 (-) True gmppb
XM_036984253.1 mRNA downstream 222883 85141224 ~ 85169972 (-) False LOC110528639
XR_005052684.1 mRNA upstream 6188 85557907 ~ 85558332 (-) True LOC118965326
XM_036984267.1 mRNA upstream 212919 85764638 ~ 85855852 (-) True atg7
XM_021610789.2 mRNA upstream 304970 85856689 ~ 85862361 (-) False hrh1
XM_021610790.2 mRNA upstream 304970 85856689 ~ 85864549 (-) True hrh1
XR_005052722.1 mRNA upstream 453129 86004848 ~ 86007056 (-) False LOC118965394
TU748303 other downstream 385350 85006726 ~ 85007505 (-) False G658255
TU748304 other downstream 385350 85006726 ~ 85007505 (-) False G658255
TU748305 other downstream 385350 85006726 ~ 85007505 (-) True G658255
TU747690 other downstream 1436087 83954247 ~ 83956768 (-) True LOC110528632
TU746415 other downstream 1776857 83608532 ~ 83615998 (-) True G656671
TU749640 other upstream 608523 86160242 ~ 86160923 (-) True G659250
TU750071 other upstream 1080688 86632407 ~ 86633856 (-) True G659543
TU750481 other upstream 1452017 87003736 ~ 87007292 (-) True G659824
TU750588 other upstream 1733182 87284901 ~ 87293755 (-) True LOC110528667
TU752038 other upstream 2701344 88253063 ~ 88259405 (-) True LOC110528687

Expression Profile


XM_036984261.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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XM_036984261.1 Expression in each Bioproject

Bar chart with 20 bars.
XM_036984261.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.