RNA id: TU749557


Basic Information

Item Value
RNA id TU749557
length 272
lncRNA type sense_over
GC content 0.50
exon number 2
gene id LOC118965394
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 86004625 ~ 86007056 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgactaacgaggtgaccaaccagcacaggagttacacatactgactaacgaggtgaccaaCCAGCACAGGAGTTACACATACCGACTAACGAGGTGACCAACCAGCACAGGAgttacacatactgactaacgaggtgaccaaccagcacaggagttacacatactgactaacgaggtgaccaaCCAGCACAGGAGTTACACATACCGACTAACGAGgtgaccaaCCAGCACAGGAGTTACACATACCAACTAACGAGGTGACCAACCAGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU749552 lncRNA downstream 2994 86001399 ~ 86001631 (-) True G659194
TU749551 lncRNA downstream 7301 85997075 ~ 85997324 (-) True G659193
TU749547 lncRNA downstream 12859 85990293 ~ 85991766 (-) True G659189
TU749532 lncRNA downstream 51227 85953176 ~ 85953398 (-) True G659176
TU749530 lncRNA downstream 52769 85951603 ~ 85951856 (-) True G659174
TU749555 lncRNA upstream 136 86005413 ~ 86005970 (-) True LOC118965394
TU749549 lncRNA upstream 12801 86018078 ~ 86018588 (-) True G659191
TU749592 lncRNA upstream 90938 86096215 ~ 86097139 (-) True G659225
TU749603 lncRNA upstream 105226 86110503 ~ 86111818 (-) True G659232
TU749652 lncRNA upstream 194534 86199811 ~ 86201349 (-) True G659260
XM_021610790.2 mRNA downstream 140076 85856689 ~ 85864549 (-) True hrh1
XM_021610789.2 mRNA downstream 142264 85856689 ~ 85862361 (-) False hrh1
XM_036984267.1 mRNA downstream 148773 85764638 ~ 85855852 (-) True atg7
XR_005052684.1 mRNA downstream 446293 85557907 ~ 85558332 (-) True LOC118965326
XM_036984262.1 mRNA downstream 452908 85401070 ~ 85551717 (-) True LOC110511195
XM_036984281.1 mRNA upstream 512217 86517494 ~ 86549674 (-) True slc6a1b
XM_021610792.2 mRNA upstream 680995 86686272 ~ 86704088 (-) True LOC110528661
XR_005052724.1 mRNA upstream 709002 86714279 ~ 86715176 (-) True LOC118965395
XM_036984282.1 mRNA upstream 718491 86723768 ~ 86820513 (-) False poc1a
XM_036984283.1 mRNA upstream 939520 86944797 ~ 86966992 (-) False LOC110528663
TU748303 other downstream 997120 85006726 ~ 85007505 (-) False G658255
TU748304 other downstream 997120 85006726 ~ 85007505 (-) False G658255
TU748305 other downstream 997120 85006726 ~ 85007505 (-) True G658255
TU747690 other downstream 2047857 83954247 ~ 83956768 (-) True LOC110528632
TU746415 other downstream 2388627 83608532 ~ 83615998 (-) True G656671
TU749640 other upstream 154965 86160242 ~ 86160923 (-) True G659250
TU750071 other upstream 627130 86632407 ~ 86633856 (-) True G659543
TU750481 other upstream 998459 87003736 ~ 87007292 (-) True G659824
TU750588 other upstream 1279624 87284901 ~ 87293755 (-) True LOC110528667
TU752038 other upstream 2247786 88253063 ~ 88259405 (-) True LOC110528687

Expression Profile