RNA id: XM_036984272.1


Basic Information

Item Value
RNA id XM_036984272.1
length 4353
RNA type mRNA
GC content 0.55
exon number 24
gene id atp2b2
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 86102263 ~ 86305534 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctctctctctctctctctctctctctctctctctctctctcagaaggaGTAATGAAGAGGACCACCATGTAGACAGAATGCAGACATTGACAGACTGCAGACGGAGATAGAAGAAGCAGAATGGGAACATGCATCTGGAGCGGCTCCCGATTGACTCACAGTAACAGAAGCCCAGAAGGGATCGTAATTCTCCTGTGGACGTACGTCGCTCCTCTCGCCGCTCTCTCGCTGCTGGTCTCACTGGTCTAGCTGGCTTCCCTTAGTGTTCTCTGGATGGTCGTACGGTCTTCTCTCCACACTGTCGCTGACTGAGGGatctcagcctgtctctgtatCTCAAAGTGACAACAGGATTtagctctccctctgtctgtcggTGGGCGCTGcagcatctgtctctctctctttctctctctctctatcgtgtGGTTTTCACCAGTATCACCGGTATTGCCGGGCGCATTCCAGTGGCAttcatccctcttcctctcctcatttcgagaatccctctctctctctctctcaacccacaCAACCCCCTCGTAAAGCTTTGTCTGAGGTTTGTACTCCTTCTTCGTCGAGTTACTGAGCAATACTAGTCAGTCATCATGGGGGACCTGACCAACAGTGATTATTACTCTAAGAACCAAAGAAACGATGTCAGCAGTAACCACGAGGGGGGCTTTGGGGTCTCGGTCATGGAGCTGCGTGAACTCATGGAGCTGAGAGGCAGCGAGGCGGTGGTTAAGATCCAGGAGGAGTACGGGGACATGGACGGGCTCTGTCAACGGCTGAAAACATCACCCACAGAAGGCTTAACAGGAGACGCAACCGACCTAGATAAGAGGAAAGAAGTGTATGGGGAAAACCTAATACCTCCGAAGAAGCCAAAGACCTTCCTCCAGTTAGTATGGGAAGCCCTGCAGGACGTGACTCTGATCATCTTGGAGGTGGCTGCCCTGATCTCTCTGGGACTGTCCTTCTATCAGCCTCCGGGAGGGGACAGCGGAGAATcctGTGGGACAGCGGCGGCGGGTGCAGAGGATGAGGGTGAGGCCGAGGCCGGCTGGATAGAGGGAGCAGCCATCTtgctgtctgtagtgtgtgtggttCTGGTGACGGCCTTCAACGACTGGAGCAAGGAGAAGCAGTTCAGAGGGCTGCAGAGCCGCATCGAGCAGGAGCAGAAGTTCCAGGTGGTCAGAGGTGCTCAGGTCATCCAGCTCCCGGTCGCTGACATCGTGGTCGGGGACATCGCACAAATCAAGTATGgtgACCTGCTTCCAACAGATGGAGTGTTGATACAGGGGAACGACCTGAAGATAGACGAGAGTTCACTAACAGGAGAGTCTGATCACGTCAAGAAAGCAGCCGACAGAGACCCGATGCTGCTGTCTGgtacccATGTGATGGAGGGTTCCGGCAGGATGCTGGTAACAGCTGTAGGGGTCAACTCTCAGACCGGCATCATCTTTACTCTGCTGGGGGCCGGAGAgccaggggaggaggagaagaaggagaagaaagACTGCCCCCATCCCTCTGCCCACCCCATCGCAACTATAGCCACCGATGGTGCTGCAGGTGGTTTTGCACCTGGCAATGCCAGCCTAGTCAATGGTAAAATACAGGATGACAATATGGAGAACAACCAGACTAAAGTGAAGAAACAGGACGGAGCGGCTGCTATGGAGATGCAGCCTCTGAAGAGCGccgagggaggagagatggaggagaaggaggagaagaagaaagcaAACGTCTCCAAGAAGGAAAAGTCTGTCCTCCAGGGGAAACTGACCAAGCTGGCTGTTCAGATCGGCAAAGCAGGTCTGGTGATGTCAGCCATCACAGTGATCATCCTGGTGCTGTACTTTGCTGTGGACAACTTTGTCCTGCAGAAGAGGCCGTGGCTGACGGAGTGCACCCCCATCTACGTCCAGTACTTTGTTAAGTTCTTCATCATCGGTGTCACCGTGCTGGTGGTGGCTGTACCCGAGGGGCTGCCCCTGGCCGTCACCATCTCCCTGGCATACTCTGTCAAgAAAATGATGAAAGATAATAACCTGGTTCGCCACCTGGATGCATGTGAGACGATGGGTAACGCCACGGCCATCTGCTCCGACAAGACCGGCACGTTGACCACCAACCGCATGACTGCCGTGGCGTGCTACGTGGGGGATGTCCACTACAAGGAGATACCAGACCCTGGACTTCTGTCTGTTAAGTCTCTGGATATCCTTGTCAACGCCATCTCCCTCAACAGCGCGTACACCACCAAGATACTGccTGCCACCAAGGAGGGTGGTCTGCCCATGCAGGTGGGCAACAAGACAGAGTGTGGCCTGCTTGGCCTGGTGCTGGACCTGAAGAGAGACTACCAACCCGTCCGTAACCAGATCCCAGAGGAGAAACTCTACAAGGTGTACACCTTCAACTCGGTCAGGAAGTCCATGTCCACGGTCATCAAACTACCAGACGGCTCCTTCAGGATGTACAGCAAAGGAGCCTCCGAGATCGTCCTCAAGAAgtgcacTAAGATCCTGAACCAGGAAGGCGAGCCGCGGGTGTTCCGTCCCCGGGACAAGGACGAGATGGTGAAGAAGGTGATCGAGCCGATGGCGTGTGACGGGCTGCGGACCATCTGCGTGGCGTACCGTGACTTCCCTGGCGACCCAGAACCCCTCTGGGACAACGAGAACGATATCCTCAATGAGCTGACGGCTGTCTGCGTGGTCGGCATAGAGGACCCTGTCAGGCCAGAGGTGCCTTCTGCTATTGTGCGGTGCCAGCGTGCGGGCATCACGGTGCGCATGGTGACAGGTGACAACATCAACACAGCCAGGGCCATCGCCATCAAGTGTGGCATCATCCACCCTGGAGAAGACTTCCTGTGTATCGACGGCAAGGAGTTCAACAGGAGGATCCGCAACGAGAAGGGAGAGGTTGAGCAGGAGCGCATGGACAAGGTGTGGCCTAAACTGCGAGTCCTGGCTAGATCCTCCCCTACTGATAAACACACATTGGTTAAAGGCATCATAGACAGCTGCTTGACAGACCAGAGACAGGTGGTTGCGGTGACAGGAGACGGGACTAACGATGGGCCAGCCCTGAAGAAGGCTGACGTGGGATTTGCCATGGGTATAGCCGGTACAGACGTGGCCAAGGAGGCGTCTGACATCATATTAACGGACGATAACTTCAGTAGCATAGTGAAGGCTGTGATGTGGGGGAGGAACGTCTACGACAGCATCTCCAAGTTCCTCCAGTTCCAGCTGACTGTCAACGTGGTGGCTGTCATAGTGGCCTTCACTGGGGCCTGCATCACACagGATTCTCCCCTGAAGGCGGTCCAGATGCTGTGGGTGAACTTGATAATGGACACCTTTGCGTCCTTGGCGCTGGCGACGGAGCCCCCCACCGAGGCCCTGCTGATGAGGAAGCCGTACGGCCGCAACAAACCGCTGATCTCCAGCACCATGACCAAGAACATCCTGGGACACGGCATCTATCAGCTGGTCATCATCTTCTCCCTGCTGTTCGTCGgtGAGCAGATCTTTGACATAGACAGTGGTCGTCacgctccactccactcccctccGTCAGAACACTACACCATCATTTTCAACACCTTCGTCCTCATGCAGCTTTTCAACGAGATCAACGCCAGGAAGATCCACGGAGAGAGGAACGTCTTCGACGGAATCTTCAGGAACCCTATCTTCTGTTCCATCGTCTTTGGAACATTCGCCATCCAGATTGTGATCGTGCAGTTTGGAGGGAAGCCGTTCAGTTGTACTCCTCTGGATTTGGAAAAGTGGGGATGGTGCACCTTCCTGGGTCTAGGAGAGTTGGTCTGGGGACAGgtgatCGCCACTATCCCTAACAGCAAGCTGCGGTTTCTGCGAGGGGCGGGTCAGCTGACCAAGAAGAACGAAATGCCTGGGGACGAGGACATGAACGAGGACAACGAGGAGATCGACCACGCGGAGAGAGAGCTGCGACGCGGACAGGTCCTCTGGTTCAGGGGGCTCAACCGCATTCAGACTCAGATCGATGTGGTGAACACGTTCAAGAGCGGCAGCTCCTATCAGGGCCAGCTACGGAGACAGTCCTCCACCACCAGTCAGAACCAGGACGTAACCAATGTTTCTAGTCCCAGTCACGTGTCCTTGTCCAATGCCCTTTCTCCTACCTCTCCCACTGGGCAGTGCTAAGAGTGGAATGAGGCTACCGCCCACGTCGTGAATTTCAGATTCGCGTCGTGAATGCATTCCGTAGCTCCCTCTACGAAGGCCTTGAGAAACCAGACTCTAGACCGTCCATCCATAACTTCATGACCCACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU749169 lncRNA upstream 25545 86069510 ~ 86076719 (+) True G658934
TU749159 lncRNA upstream 88460 86011027 ~ 86013804 (+) False G658927
TU749156 lncRNA upstream 88460 86012431 ~ 86013804 (+) False G658927
TU749157 lncRNA upstream 89068 86012431 ~ 86013196 (+) True G658927
TU749158 lncRNA upstream 89889 86011027 ~ 86012375 (+) False G658927
TU749346 lncRNA downstream 31142 86332579 ~ 86337615 (+) True G659053
TU749398 lncRNA downstream 44722 86346159 ~ 86347408 (+) True G659060
TU749401 lncRNA downstream 48759 86350196 ~ 86350597 (+) True G659063
TU749417 lncRNA downstream 83506 86384943 ~ 86385460 (+) True G659077
TU749361 lncRNA downstream 107265 86408702 ~ 86412974 (+) False G659058
XM_036984467.1 mRNA upstream 68703 86018075 ~ 86033561 (+) True LOC110528658
XM_021610783.2 mRNA upstream 357470 85649845 ~ 85744794 (+) False vgll4b
XM_021610782.2 mRNA upstream 357470 85696536 ~ 85744794 (+) True vgll4b
XM_036984266.1 mRNA upstream 453623 85630978 ~ 85648641 (+) True tamm41
XM_036984265.1 mRNA upstream 484333 85551793 ~ 85617931 (+) False pusl1
XM_036984279.1 mRNA downstream 43288 86344725 ~ 86406029 (+) False slc6a11b
XM_036984280.1 mRNA downstream 43979 86345416 ~ 86356637 (+) False slc6a11b
XM_036984278.1 mRNA downstream 44014 86345451 ~ 86406029 (+) True slc6a11b
XM_036984285.1 mRNA downstream 684114 86985551 ~ 87004405 (+) False LOC110488455
XR_002468410.2 mRNA downstream 703479 87004916 ~ 87007309 (+) False LOC110488454
TU749087 other upstream 206115 85895826 ~ 85896149 (+) True G658887
TU749085 other upstream 215143 85886592 ~ 85887121 (+) True G658885
TU747353 other upstream 1094766 85006479 ~ 85007498 (+) False G657481
TU747351 other upstream 1094766 85006580 ~ 85007498 (+) True G657481
TU747113 other upstream 1484229 84614663 ~ 84618035 (+) False G657292
TU749391 other downstream 107265 86408702 ~ 86412585 (+) False G659058
TU749484 other downstream 219623 86521060 ~ 86521822 (+) True G659136
TU750287 other downstream 799027 87100464 ~ 87102270 (+) True G659706
TU750444 other downstream 1083462 87384899 ~ 87387283 (+) True nisch
TU751823 other downstream 2121327 88422764 ~ 88427927 (+) True G660790

Expression Profile