RNA id: XM_036984286.1


Basic Information

Item Value
RNA id XM_036984286.1
length 3245
RNA type mRNA
GC content 0.54
exon number 14
gene id atrip
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 87007438 ~ 87053874 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATCGCTGTTTATGTTGAGGTCGTGAATAAGCAGCGTTGTGATTAGCTCATTCTGTAAAACGTTTGAAAGATGGTTTGATAGCTTGCTAACTGAGTTAGCCTGCAGCTATTTTTTTGtgaactttttattttatttttaggaATGCCTTCTAAATTGTGAGACGTGCGACAAATAACTAGCCAGAGGCTTGCTTTGAACCGCAATACCGGAGAGGTTCAGGTTGAATGGTTGAGTTCCCTGACCCACATTGACTGGCGCTAGTTAGCTTGCCAaagttcgctagctagctaaaaagTTTCTACTTGGCTATCCAAGCTACACGTTTTCTAGTAATTTTAGTGGCAAAAAAAGTAGTCGGACCCCTGGCCCGGTAACATGGCGTACCCACCCCGCAAGCGCCTCAAGGTGGTGAGCCCTGCGGCTCCATGTAACGACCCCTTCGGAGGTGACGATGACTTTACCCAGGATGATCTGGAAGAGATTGATATTATAGCATCACAGGCCGTCAACGGGGATCTAGCAGGACCAGGGCCAAGCTCCAAAGGGACGGGGATGGGACCCATTGGTCCTCGACCAGGGGAGTCGACGAAGCCGTATTCGGGGAGCAGACAACAACCCTCTGGTCTGGCTAGGAGTAACtccatgagagacagagagatccccGAGTTACCATGTAAAGACACATTCGGGAACAGACATCCGTCTAAGACTGACGGGGAGCATTTAAAGCAACTGGAAGCCCAACAAGCAGACCTCCAGAAAAAGCtaaaggaggtagaggaggagatccTGATGAAGAACGGAGAGATCAGAGTGCTGCGTGACTCCCTCAGGGCCGCCCAGCAGGAGAAGGAGACGCAAAGACAGGCTCAGCTCctcctggagagggagaagagagacactCAGAGCGAGAAGGAGAAGGAGCTCTCCAAGAAGGTGCAGTCCCTGCTGTCTGAGCTGCACTTCAAAGAGGCTGAGATGAACGAGATGAAGACTAAACTACAGAACGCAGAGAAAGGAAGGAAAGCAGTGGCTTCACCTGTCCCCAGAAACAGCCCCGGTCTGTCTGGTCCCACTGCCCTGCTGCAGGGTGCCGGTGGTGCCAGCAGCAGCCCTCGCTGTGTAGCCATTCCTGGAGGAACAGCCTTCATCACCAAGGAGACGTTTGGTGCCCAGCTGCCCTCTAGGTCAACGCCAGGCAAGACCCCGGGACCAGGACACCTCAGAGACGATGGAAAACAGTCCAGCGGCAGACAGGAAGTGACTCACTCAGACCCTTTTAACACATTCCAACCCTCTCATTATCAAGGCTCAGTGCTGTTAAGTCTGCTGTTACAGCATCCTTTAGACCCCAGCAGTCTGGGTCTGGGTCACCTGCTCTGCATCAGCCCTGACGCACTACCTGGTCTCCTGACCAACACCTGTCTCAGCTcAGGGTCTTCGGTTGGCTCCAGTTCCTCCTCGACAGAACCCAGGCTTGTTCCCCACCACAACAAGCCCCACAGCCAGCAGCCGCGCTTCAAACACTATCAGAACCTGGCCCTGTCTGGCCTCAACATGATGGCCCTGCCCAGACACCACACTGCCTTGCCTCCTGAGGACCCGCCCAACCCGAACCCTTCCCACTCTGCCCCTGCCCTGAAAAACAATACCAGGTCCTGTCCTGGTGctgtccacctcctccctctcctcgaCTACCACATCGGCCTGTTCTGCCAGAGTCTGGAGGCTATCGCCCTGGACGGCTCAGGGACAGGGTCTGGTAAGAGGACCCTGAGAGGGAGCTCTCTGTCCGGGTCGTCGGACGGCAGCCTGGCCTCCAGCGTGGAGGATTCCCTAGGCAGTCAGGAGGAGTTTGCCCTGGCAGCCCTGAAGGCCCTGCATCATACTGTGGCCCAGAGCTCTGAGGTCGTGAACACCCTGCTGGCCCTAACGCCTGGAGCAGAGGGGAGCCCTCCACAGGGTAACAGTAGACACGGGCCCATCCTGGCCTCAGGCCTGGCCCCCCTGCTGCCTGACACCTCCATCCAGCCTGGGACTTCTAGAACCTCTGAGACCCCAGTAGATGGCACCAGAGAGGGTCCggccctccaccctctcctcagGAAGCTCCTTCAGCTGTCAGACCCCTCCTTCTCCACCAGCGCTTTTCAGAGGGAGGCCCTGGTGCCTAGCAGTCTGACGACTCTCAACATGCTGCTGGAGAGAGCACAGGAGCGGCAGCTTTCCAGGTTCCAGTGTGTTGTGTCCAGTCCGGCTCTGTCTCGCTGCCTGTCTCTAGACTCGTCCTACCAGACCCTGTCTCTGTCGGTCTCCCTACTAGCTGGCCTGGCCCACAGCGATGAGCTAGCTTTTAGAATCTGCTGCCATACAGACTGGTGTCCGTTACTGAAGGTTTTCCAGTACATCACCTCCAGACCTGACAAGACCGTCACAGACTCTCACTGGTCACAGCTGGAGGTGGAGGTGGTGCGTTTCCTGACCAGTCTGTTCAATAGGAAGGCTTCCACGTGGAGTGTGTTTGTTGAGTCGTCCTGTCAGTGCCACAGTGAGGTAGTGAAGACCACAGTGGTGCTACTCCACAGGCAGTGGCTGGACCTCCGGGGCCGAGTGGAGGGGAGCCCAGGGGGCGAGGCAACGATCCAAAGCCCAGCGTGGTGCTCCTCTCCTGCGGTTGATCTGCTAAGGGAGGCTCTGATGCTGCTCCACTGGCTCTTCCTCAACAACAGTAGCTTCTCAGAGcactgtcttcctgtccttcACATGTATGACCAGATGATTCCTGCCATTAGAGACACCTTCAGGAGGATCCCCCACCTCTCAGAGAGTGAAGAATTGGCTTTGGATGAGATTTGTCGTCCTGAGTCTGAGGATACTGAAGATATGGACACTGGCTCCTGACCTGTTGTCCTACACCGGACTAGTGTTCagttgcccctagatgctgatcttgggtcagtttttgCAATTCCCCTCTACTAATGGTTTAGGTTAGGAGGGGGAAGAtaactgaattgaccccagccctgctaTGTACTGGGACCAGTTTCCCTATATAATGTGCTACAGTAGTGCCCAGAAAAGGGCCCTAATTGGGACGCAGGTAATATCTTGTTGGTTTTTCTGACAAATGTCTGACTGTTCTTGATATTGGAATGTGAAAATATTTTGTGATTACTGTACTGAGCTCTTTGTGAGTTTTTATTTGATTCCATTAAATAACATCAATGTTGCAAACGACAA

Function

GO: NA

KEGG:

id description
K10905 ATRIP; ATR interacting protein

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU750505 lncRNA downstream 60219 86946470 ~ 86947219 (-) True G659846
TU750500 lncRNA downstream 62926 86941822 ~ 86944512 (-) True G659841
TU750173 lncRNA downstream 118926 86888026 ~ 86888512 (-) True G659619
TU750168 lncRNA downstream 174036 86832731 ~ 86833402 (-) True G659614
TU750114 lncRNA downstream 239679 86705334 ~ 86767759 (-) True G659567
TU750574 lncRNA upstream 44001 87097875 ~ 87102123 (-) False G659907
TU750572 lncRNA upstream 46590 87100464 ~ 87102123 (-) False G659907
TU750575 lncRNA upstream 46590 87100464 ~ 87102174 (-) True G659907
TU750595 lncRNA upstream 74421 87128295 ~ 87128815 (-) True G659925
TU750600 lncRNA upstream 92815 87146689 ~ 87147130 (-) True G659930
XM_036984283.1 mRNA downstream 40446 86944797 ~ 86966992 (-) False LOC110528663
XM_036984284.1 mRNA downstream 40446 86944797 ~ 86966992 (-) True LOC110528663
XM_036984282.1 mRNA downstream 186925 86723768 ~ 86820513 (-) False poc1a
XR_005052724.1 mRNA downstream 292262 86714279 ~ 86715176 (-) True LOC118965395
XM_021610792.2 mRNA downstream 303350 86686272 ~ 86704088 (-) True LOC110528661
XR_005052725.1 mRNA upstream 4394 87058268 ~ 87059864 (-) True LOC118965396
XM_021610799.2 mRNA upstream 60230 87114104 ~ 87293964 (-) False LOC110528667
XM_021610800.2 mRNA upstream 60230 87114104 ~ 87293966 (-) False LOC110528667
XM_021610803.2 mRNA upstream 287315 87341189 ~ 87342665 (-) True wu:fb55g09
XM_021610805.2 mRNA upstream 356306 87410180 ~ 87422713 (-) False si:dkeyp-87e7.4
TU750481 other downstream 146 87003736 ~ 87007292 (-) True G659824
TU750071 other downstream 373582 86632407 ~ 86633856 (-) True G659543
TU749640 other downstream 846515 86160242 ~ 86160923 (-) True G659250
TU748303 other downstream 1999933 85006726 ~ 85007505 (-) False G658255
TU750588 other upstream 231027 87284901 ~ 87293755 (-) True LOC110528667
TU752038 other upstream 1199189 88253063 ~ 88259405 (-) True LOC110528687
TU752275 other upstream 1705619 88759493 ~ 88759938 (-) True G661128
TU752665 other upstream 1999202 89053076 ~ 89061481 (-) True G661426
TU752543 other upstream 2043173 89097047 ~ 89098578 (-) False G661335

Expression Profile

XM_036984286.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
End of interactive chart.

XM_036984286.1 Expression in each Bioproject

Bar chart with 21 bars.
XM_036984286.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.