RNA id: XM_021610799.2


Basic Information

Item Value
RNA id XM_021610799.2
length 1357
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC110528667
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 87114104 ~ 87293966 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctaaaataaataaataaaatacttatCACACAAGTATCATATCATTTAACTTCGCTATCGTGGTATTACCAATGTTGTTTGAGTTGACACAACGTTATGATCTTCTGAGATGTAATGTACCTCCGTTAATTTGAGCGTACGCAGATCCGTCCCACAACATTTATTCCGGAAGTCAGAAACAGCGCGAAAGGTTTGTTTTGAAACAGTATTTCAGAGGAGTCTGGCAGAATGAAGAAGAATCTGGAAAATGTTTACGAGGCTCAAATCAAAGCACTCCAAGAAGAGATTGCAGCACTGCAATGCCAACAGGACAAGAATGAACGAGAGATTGCGATGAACCTCGCAGGAGGACGCATGCAAGATGCTCTGTTGATCATGACAGGACATCAGGAGAAGGAGATGGGGAAAAGTCAGAGACACATCACAGCTCACCTGAAGACTGAGATAATGGAGATGGAGGAAGATCTCATCAGACAGACCAAGATAAACGGAATCGTTCTTGTCAACTGCAGTGTGAAGACTGTGGAGAAAGGCAACAAGAAGATGGTGCAACAACACAGGCTGACGGGCCACTGCTCCTTCTTAGACTTCCAAGTGGAGTTTGAGCTCACTGATGTTCAGGAGGACactaccctggtgaggacgatcaCTGACCTCAACATCGTCATGGACAGCACTGAGTTTAAGGACTTCGGTAATTTTGTGTCTGGAGTGGAGGACAAGAGAGACCTGCTGCTGTTTTTCAGGACCCTCAGGAGGTTCTCTGACAGATGTGAAGACAGACGCAGAACATTCCAGCACTTCCAGgagaAGTATCCATGTGTGGTCAGTCTACCCGGAGGCTGCAGGGCAGAGGTCATGCAGATCAAGTCACCTAAACTAGCCGGGTGTGCTCTGACGATCTACTGGAGCATTGAGGTGACCAATGAGGGGGATATCACGCCCAAGATAGACCTCCTTACCAAGATGCCTGAGAAGGTGCTCGAGATGGACAGCAGGAAGGTGATCGAGAATGCCCCCGACTCCTTCCAGAGTCTTCTGAGGATCCTTGGAGCAGAGGCTTCTATTGACACTGTAATACAGTCTGTGGATGTTTAACAAGTTTCTTTCAATTGCCCTCTAACTTTAAGGAATATTTCCCTCAAaactaaaaacaaaaacaaaataatgtttttaattgtCTGAAGACTTGGTCAAGAAACCCCCAGAACCCACATTCTGTCATCAGTTTATTAAATATAAACAATTCTTTACTCTCAAACATTTATAAATATCTGTTAATGCCATCTGTATGTATACATGTCAATATAGCATTAGTTGAAGATCTAGAAAAATAAAAAGATTTTAAATACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU750575 lncRNA downstream 11930 87100464 ~ 87102174 (-) True G659907
TU750574 lncRNA downstream 11981 87097875 ~ 87102123 (-) False G659907
TU750572 lncRNA downstream 11981 87100464 ~ 87102123 (-) False G659907
TU750541 lncRNA downstream 80449 87032802 ~ 87033655 (-) True G659881
TU750485 lncRNA downstream 104740 86928258 ~ 87009364 (-) True G659827
TU750739 lncRNA upstream 18517 87312481 ~ 87313015 (-) False G660022
TU750740 lncRNA upstream 18517 87312481 ~ 87313015 (-) True G660022
TU750750 lncRNA upstream 32137 87326101 ~ 87326723 (-) True G660031
TU750774 lncRNA upstream 71574 87365538 ~ 87365986 (-) True G660054
TU750786 lncRNA upstream 95626 87389590 ~ 87389883 (-) True G660066
XR_005052725.1 mRNA downstream 54240 87058268 ~ 87059864 (-) True LOC118965396
XM_036984286.1 mRNA downstream 60230 87007438 ~ 87053874 (-) True atrip
XM_036984283.1 mRNA downstream 147112 86944797 ~ 86966992 (-) False LOC110528663
XM_036984284.1 mRNA downstream 147112 86944797 ~ 86966992 (-) True LOC110528663
XM_036984282.1 mRNA downstream 293591 86723768 ~ 86820513 (-) False poc1a
XM_021610803.2 mRNA upstream 47225 87341189 ~ 87342665 (-) True wu:fb55g09
XM_021610805.2 mRNA upstream 116216 87410180 ~ 87422713 (-) False si:dkeyp-87e7.4
XM_036984297.1 mRNA upstream 183425 87477389 ~ 87494213 (-) True LOC110528674
XM_036984300.1 mRNA upstream 201422 87495386 ~ 87554716 (-) False pxk
XM_036984298.1 mRNA upstream 201422 87495386 ~ 87554717 (-) False pxk
TU750481 other downstream 106812 87003736 ~ 87007292 (-) True G659824
TU750071 other downstream 480248 86632407 ~ 86633856 (-) True G659543
TU749640 other downstream 953181 86160242 ~ 86160923 (-) True G659250
TU748304 other downstream 2106599 85006726 ~ 85007505 (-) False G658255
TU752038 other upstream 959099 88253063 ~ 88259405 (-) True LOC110528687
TU752275 other upstream 1465529 88759493 ~ 88759938 (-) True G661128
TU752665 other upstream 1759112 89053076 ~ 89061481 (-) True G661426
TU752543 other upstream 1803083 89097047 ~ 89098578 (-) False G661335
TU753077 other upstream 2164187 89458151 ~ 89459700 (-) True G661773

Expression Profile