RNA id: XM_036984288.1


Basic Information

Item Value
RNA id XM_036984288.1
length 4764
RNA type mRNA
GC content 0.48
exon number 18
gene id nol8
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 87293964 ~ 87315116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCGACGACACAACGCGGAACCATGAAACCCCGGAACTAAACACACGTGTTCACAAATGTGTCCGGAATCTTTTTCGTGTACCACCGATCTGGATGCGTGTGAATTTCCAACGCCGAGGTAAACAGTTTTTGATTACATGTTCATTTCGGATCGATTAATATATTTGACCTGTTACTTTACACACTTGGATTTCTGCCTCAATTTTGTTCAACTTGTCCAGTTAACAAAGATCTGTCAATCTGAGGAGTTAGTCATCATGAAACGTCTATATATCGGTGGCCTGAGCCACACCATCACTCAAAAGGATCTGAAAGACAGATTTGGTAAATTTGGTGATGTTCAGGATGTGGAACTCCGGACCCGGAGAGATGATGAAGGAGTTCCTTATAAAACCTTTGGATATATCAATTTAGAAATTACTGATGCTGGTTTTAAGAAATGTATGACTGTGTTGAACAAGTCCAAATGGAAAGGTGGAACAATACAAATTGAGCAGGCCAGAGAAACCTTCTTACAGAAATTAGCTCAGGAGCGTCATGAAGCTGCAGAGAAGATCCAATCACCAAGCGTCAACCACAAAGACAAACTCGTGGAGTCAATGAAGGAGGCAGGAGTGGAGAACTTCCACATGAAGGCAGCTGTTCCTGGGACAGAGATACCTGggcacaagGATTGGGTTGTGAGTAAATTTGGACGAGTCCTCCCGGTTCTTAATCTCAAGTGCCAAGGAAGGAACAAGTTCATCAAGTATGATCCGTCGAAACACAGCCACAACATCAAGAAACTAGAGAGTTCCGCCGAGGTTCCAGACCCGACGCCCGTGTCCCAACTGACGTGGGAAATATCAGGCGGCGACGACGACATCagtaagaagaggagaggagagttccCGCCGCAGAAAAAACCACTTGCTAAAAAGAAGAAAGACCGTCCGAACCAAGTCGTTGCAAACGGACAGTCCGACCGTGTGAAGTCCTGTCGGACCTCGGAGAAAGGTTCAACGGTTCTGAAGTCTAACGGCGAAACCAGACCTCCAACTAAACCTAAACAGACACCGGTCTCTAAGAAACTCCAGACGcagacctctgtgtgtgtttttgacagTGGCGATGACTCGGATGGGAACATTAGGACGTTGGCACAGCGGAGTACCCCGGTGGACGGCCCGGTAGTAGAGGAGGATGAAGACAACCTGGAGGTGGTAGGCGATAACTACATACCCAGAACATTCCTTACCCAGCAGAAGATTAAAGATGTCTGCCAGCTTCCAGGGGGGTCTTCTGGGAAGAACGAGGAGGATTATGACTCAGCTGATACTGATGAGATCCTCAACTGCAGAAAAACACCCAGTGGTACCAAGCAGGACCAACTGCCCGAGGTCAGTAAAACACAAGAGAAAGCTGAGGTGAATAAGCAAACCAACAACCTAGAAACAGACAAAGTCCTCCCTGAAAAGGCTAACAAAGTCCTCCCTGAAAAGGCTAACAAAGTCCTCCCTGAAAAGGCTAACAAAGTCCTCCCTGAAAAGGCTAACAAAGTCCTCCCTAAAAAGGCTGTAAAGAAAGTCTCCCCTATAAAGAAGACCCCTTCGCCAGAGAGTGATAGTGGTGATGGTGAGGATGATGACTCGGAAGAAGAGCGTGAAGATTCCTACTCTTCAAAAGCCAAAAGGACTTATAGCGTCCTCCCTAAGAAAAAGGCTATTGAGAAATCCACTACCCCTTCAGaatctgatgatgatgatgatgatgatgattcggAAGAAGAGAGTGATTCTGACTCTTCAAAAGCCCAAAAGACCGGCAAGAAGGTTGTCTCTAAAAAGAAGACCCCTCCTTCAGAATTATCATCTGACGATAGTGAATCAAGTGAAGGTACATCTGAGGCTAGCGCCGATTCCGAATACGAAGCCATGTTTACTAACTGTCAGAGGTTGGAGTTTTCACTGGACGATCTGCAGCAGCTGGTTAAAGAATCGTTTTTGAAAGGCTTGGACAgtgacgacgacgacgacgatcCGGGATCTGATTCACAACAACCTGGACCAAACCGAGTGTCTGAGGTGCTAGGGATGGAACCCAGGGCTACTGCCTCTGAGGCTCCTGTACCGCTGGCTAAGACGGGAAATGGCAACACACCGGAGGAGATTCTGGCGGCCATCTTTGAAGAGGACAACAGCGACGaggtgagagagaagaagaagaagaaggggaagaAGAAAACAAATCCGTCAACATCTCTTCCTGCTTTCCAGGGGACCAAGGCTCTCTTAGCCACATCGCCACAAAGTCTAAAAAGACAAGTTGAGGAGGACGGAAAAATGAAGACGTCCACTAAGAAACAGAAACGTGACAGATTAGTACTCTCAGAGGATGACGCCAAGACTGTGTCAAAACCCTTAGAAACGAAAGGCACTAAAACTAAAACTCGTCCTCCTAGCAGCTCGGACAGTGAAGATACAACCAAGTCACCAGCCCTCAGACGGAAAACGACTTCGAAAGCCGAGGCAGAGAAGAAGTCCGTCCCAGCGGCCAGCTCTACGTCCAGCAGCAGTGGGTGCTCCAGTGTGGAGTCAGAGATGGAGGAAGATGTACCTGCTAAAAATACTCAAAAGGCTgagGTGTCTAAGAAGCCCCAGACTGCTGGTGGGGTTATAGATGCTAAGCAACAGGACAACCAAAAACGCCTAGCTGCTCAGGAACAGAGGCAGAAGGAGGCTGAACTACAGAAGAAGCTCATCCAGGAGGCTCTGGCTAAACTGGATTCAGCTGCTAATGGGAAACACCACATCAAGTTCAGCTCTGATGAGGGAGAGGATGGCAACGAGGAAGAACATACTTCCCATGTACCTCCCAACCCCAAGAAGACACTGTTCCAGGACAGCCAGTCTGATGAGGAAGACTCTAGTGATGAAGAATCACCAGCTCGAGGAAAGCCAGACCTTAAAGACAGGGAATATAAGAAGCTGGCGGGCAGCAACCTGTTTGACgacgaggatgatgatgatgatgatgaggaggagaaggatggggACAGGTTCCAGATTAAACCTCAGTTTGAAGGAAAAGCTGGAGCGAAGCTCATGCAACTGCAGTCGAGGTTTGGAACAGATGAGCGTTTCCAGATGGATCACAGGTTTATTGACAGTGACGACGACGAACCAGAGATGGAGTCGTCTCAGCcggagagagagtgtgagctggtagaggagaagaagaaaagtCTAGACATCTTAAATAATCTCCTCAACATCAACGTACAACCCTCTGACCCTAATAAACCCACAGCTAAGGGCAAGACGTTCAGAGATATCTCAGCGTTGCAGTATGACCCAACCAAAGAGGAGCACGCTGCTTTTGAAACTAAGAAGGACAAGCCCAAGAAAGACAGTAAACTGGCAAGGAAGAAGAAGCGGGAGGAGGCGGAGAAGCTGCCAGAGGTCTCCAGGGAGATGTATTACGATGTGTCCATGGATCTGAAGGAGGTGTTTGGAACCTCCAAGGAGGAGaaaacggaggaggaggaggaggagaatgtgGCCTGGGataaagaagaggaagagacCAGTCAGCCTATGGCAGTCGATCCAGTGATGGTGTCATCTCACCTGTCAACCAATGAGGGAGAGGCATCGTCAGGCTTCAAGTTCTCGTTCTTTGGGGGTGACACGGCAGCCGACACCACCACTGAAAAAGAGGAGTACCGTATCGAGACGCTCAAGGGGGCCAAGGTGTCATGGCAGGTGGACCCTCGTTTCCAGGACAgcagtgatgaggaggaggaggaggaagaggaggccaaGGAACAGACTGACACCACTACACCCACAGAAGAGCCGCTGGCGTCGAAGAAAGCTTTCTTCTTTTTCCGGCTCGACGATGAACGGTTAAAAGAGGGGCCTAAAGCGTTCTGCAGGTCATCCAAGCTGGAGGACCAAAGGGAGAtgtgggaggagaagaggacgggACTCATAGAGGAGTACCGTAAAAAACACAAGGATGCAAGAAGGAAGCTGAAAACCTCCCAAAGAAACTGACACGGGATCCAcaagacattgagagagagagagagagaggacctctCGTTTGACACCGTCTTACCCGACTCGACTAACAACCATGCTAGTGGCCAAGACTTCTCCCCAGACCATTTCAAATCATATTCTGACTTTAGGGATGgtacttttttttttgtattatgttaAGTTCTTACCTCCAACTGCAATCGTGTTACCGGCATAGTTTAGTTTTAATTTATAAAGAGACATGGCCGTTTACCAATAAAACCAGCTCCATTTTCCACCACCAGGGGACAGGGCCGTGTCGTTTTTACCTCAGATGGTGTTATTGACTTCCTTGAGGTGGTGTGGGGAGACTGAAGGTGCCCCTAGACGCTGGTCTCGGGTCAGTTTTTGAATTTTCCCCCACTAATTGTTAACATTAGGATTGTGGGAAGGGGAAGCTGACCCTAGATCTGTACCtgaggggaaacttcaccctggagTGAGGGAGACTGAAGGTGCCTCTAGACGCTGGTCTCGGGTCAGTTTTTGAATTTTCCCCCACTAATTGTTAACATTAGGATTGTGGGAAGGGGAAGCTGACCCTAGATCTGTACCtgaggggaaacttcaccctggagTGATCCAACTCCATTTACATTACATAATGATGTGAATCTGATCTGTACTACAGAATTGCATGGTTGTAATTGATTTATGTCTCTTTTTTTCTATGGAGAATTAAAACTCAGAATATCTTTC

Function

GO: NA

KEGG:

id description
K14836 NOP8, NOL8, NOP132; nucleolar protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU750290 lncRNA upstream 134858 87158416 ~ 87159138 (+) True G659707
TU750317 lncRNA upstream 142614 87150909 ~ 87151382 (+) True G659722
TU750308 lncRNA upstream 164997 87127906 ~ 87128999 (+) True G659715
TU750303 lncRNA upstream 178641 87115074 ~ 87115355 (+) True G659711
TU750298 lncRNA upstream 179796 87112918 ~ 87114200 (+) True G659709
TU750441 lncRNA downstream 69783 87384899 ~ 87387283 (+) False nisch
TU750442 lncRNA downstream 69783 87384899 ~ 87387283 (+) False nisch
TU750443 lncRNA downstream 69783 87384899 ~ 87387283 (+) False nisch
TU750398 lncRNA downstream 75246 87390362 ~ 87390747 (+) True G659760
TU750453 lncRNA downstream 95080 87410196 ~ 87410990 (+) True G659802
XM_036984293.1 mRNA upstream 44822 87232952 ~ 87249174 (+) True ogna
XM_036984292.1 mRNA upstream 95987 87169591 ~ 87198009 (+) True aspn
XM_036984290.1 mRNA upstream 137091 87116760 ~ 87156905 (+) False ecm2
XM_036984291.1 mRNA upstream 137091 87116760 ~ 87156905 (+) True ecm2
XM_036984287.1 mRNA upstream 187208 87066162 ~ 87106788 (+) True ippk
XM_036984296.1 mRNA downstream 30961 87346077 ~ 87372402 (+) False nisch
XM_036984294.1 mRNA downstream 30964 87346080 ~ 87385323 (+) False nisch
XM_036984295.1 mRNA downstream 30964 87346080 ~ 87385323 (+) False nisch
XM_036984304.1 mRNA downstream 331901 87647017 ~ 87658838 (+) True LOC110528678
XR_002474301.2 mRNA downstream 636313 87951429 ~ 87953496 (+) True LOC110528683
TU750287 other upstream 191726 87100464 ~ 87102270 (+) True G659706
TU749484 other upstream 772174 86521060 ~ 86521822 (+) True G659136
TU749391 other upstream 881411 86408702 ~ 86412585 (+) False G659058
TU749087 other upstream 1397847 85895826 ~ 85896149 (+) True G658887
TU749085 other upstream 1406875 85886592 ~ 85887121 (+) True G658885
TU750444 other downstream 69783 87384899 ~ 87387283 (+) True nisch
TU751823 other downstream 1107648 88422764 ~ 88427927 (+) True G660790
TU751969 other downstream 1307197 88622313 ~ 88689342 (+) True G660853
TU752005 other downstream 1376778 88691894 ~ 88694076 (+) False G660886
TU752324 other downstream 1501969 88817085 ~ 88817655 (+) True G661162

Expression Profile