RNA id: XM_036984296.1


Basic Information

Item Value
RNA id XM_036984296.1
length 2520
RNA type mRNA
GC content 0.48
exon number 15
gene id nisch
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 87346077 ~ 87387283 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttattttacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacaacagtgggttaactgcctgttcaagggcagaacgacagagttgtcagctcggggatttgaacttgcaacctttcggttactagtccaacactctaaccactaggctaccctgccgtaaaATAAAGAAACCACATGGACAGACAGCCATTAATCAATTATCTCCGATTAATCAGAGATAATGTAGTGCACCGTGTCAGCATTTTGTCATGCGGTGTCTATCATCAAGTTAAATTATTATATAATATCACCATTTTGGTGATTACTGTCACTGGTCGAGAGTCTCGACGACTCACAGACAAGAGTTATTTTTAGATTCAGATAAACCTATTGCTGGATAAATAGGTTAATCTATTCTTTACGCAGCATTGGACTGAGTACTAAATCATGTACTGGTACCAAGACAGCCAGTCAGGTCAAAGATTTAGAAGTAGGCTATTAGGGAAAGGACAACGCCTCTAGATCTGTTTAGCGAACGGTCTCTCCTTTTTGGCTTTGAATAGTTTTCCGGGATTTAACCAGACCGCAGCTGTCTGTCACAACAAAGATGGAGGAGGAAGCTAGCTAGCACTGTACATCCACCGAGGACCTTAAAGCTAAAACAACATTGGACCAGTTTCTctactgattatatatatatattttttgatatcGTGATTTTCAAGATGGATACTGCCGTATTTCCCGAGGATGTCGTTGTTAAAAAGGTTTCCATCGTTGGATCGGAGCTCGTAGAGAATTACACTGTGTACGTCATTGAGGTGAAAGTAAGGGATCACAGATGGACCATAAAGCATCGCTACAGTGATTTCCATGACTTGCATGAGAAACTGACAGCTGAGAAGAAGATAGAGAAACATTTACTGCCGCCTAAGAAGATGATCGGTAAAAACTCCAAAAGCCTGGTAGAGAAACGTCAGAAGGAACTGGAAGTCTACCTACAAACACTGCTGGTCAGATTCCCTACAGCTGCCCCTAAAGTCCTCTCCTACTTTCTGCACTTCCACCAATATGAAATTAATGGAATCACAGCCGCTCTGGCAGAGGAGCTGTTCCACAAGGGAGAGCAGTTGCTGGTGGCTGGTGAGGTGTTCACATTGTGTCCCCTCCAGCTGTATGCCATCACTCAGCAGCTGAAGCTGGCCAAGCCTACCTGCTCTAATGGTGACGCCAAGGCAGACCTGGGACACATCCTGGACTTCACCTGCAGACTCAAATACCTGAagATCACAGGCaccagaggagaggtggggaccAGTAACATCCAGGAAGACAGCCTCACGTTTGACCTTTCAGTCTTTAAAGCTCTCCTACAGATAGAGATAAGTGACTGTAACTCGGCCCAGATCATGGGACTGCCTTCTCTGAAACCCTGTCTGGTCACGCTGAATGTCCACCACTCTGCAGCATCCATGATGGATGTGCTGGTTCCGGAGGCATGCGTGTCCCCTCAGTGGGTCGCAGAGGGAGCGCTTTCAGACCGGCCCGTTGCCACCATCATCCCTACCTGGAAGACTCTCACCACCCTGGACATGAGCCACAACCACATAGGCTGCATAGACAACTCAGTGAAATTGATACCAAAAGTCGAATTCTTAGATCTTAGTTCCAACGAGCTCTCTATGGTGGAAAACCTTCAGCACCTGTACAATCTGATCCACCTGGACCTTTCTTACAACATTCTGACAGTGTTAGAGGGGGCCCACACCAAACTGGGTAACATCAAGACCCTCAACCTGGCAGGCAACCAGCTCGACAGCCTCGCAGGCCTCACTAAACTATACTCTCTGGTTAACCTGGACCTCAGCTCCAACAAACTGGGACAGctTGAGGAGATCAGGTACATAGGAATGCTGCCCTGCCTGGAGAGGCTGGTCCTGTCTAACAACCCCATGTGTATCATCCCTGACTACAGAACCAAGGTGCTGGCTCAGTTCTGGGACCGCGCCTCAgagGTATGCTTGGACAGCACTGCGCCGACAGAGAAAGAGCTGGACACTGTGGAGGTGTTGAAAGCTATTCAGAAAGCCAAAGAATCTAAAGACCGAATGGCCAACAACGAAAAGAAGAATTGATATGTAAAGAAGAAGGCTTTGTTACCCCTACAATATTGACTCCTGTGGATTTTATTGCACTTGATACCCAGCGATGCTATGATGATGTAAACACACTGCCTTGTGAGGAACAACTACAgGTTACCAGCCACCGACCTGACGCTGATTCTAGTTCTTTTGACCGCTCCAGTACCCAACAGAACCAGAACActgctgctgctgtgtggaggacagagaggagcgaTACACATGGAGCAACACTAACCTGAGGACCCCTGtgctccccctccacctcccctccacctcctcctgtcCGTCCTTCACCTCCCTGCTGTCTGCCCGCATCACCAGAGCcctgggagaggagaacaggaggccCAGCAGACTCCAAGATCTCCCCAGCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU750290 lncRNA upstream 186939 87158416 ~ 87159138 (+) True G659707
TU750317 lncRNA upstream 194695 87150909 ~ 87151382 (+) True G659722
TU750308 lncRNA upstream 217078 87127906 ~ 87128999 (+) True G659715
TU750303 lncRNA upstream 230722 87115074 ~ 87115355 (+) True G659711
TU750298 lncRNA upstream 231877 87112918 ~ 87114200 (+) True G659709
TU750441 lncRNA downstream 12497 87384899 ~ 87387283 (+) False nisch
TU750442 lncRNA downstream 12497 87384899 ~ 87387283 (+) False nisch
TU750443 lncRNA downstream 12497 87384899 ~ 87387283 (+) False nisch
TU750398 lncRNA downstream 17960 87390362 ~ 87390747 (+) True G659760
TU750453 lncRNA downstream 37794 87410196 ~ 87410990 (+) True G659802
XM_036984289.1 mRNA upstream 30961 87293964 ~ 87315116 (+) False nol8
XM_036984288.1 mRNA upstream 30961 87293996 ~ 87315116 (+) True nol8
XM_036984293.1 mRNA upstream 96903 87232952 ~ 87249174 (+) True ogna
XM_036984292.1 mRNA upstream 148068 87169591 ~ 87198009 (+) True aspn
XM_036984290.1 mRNA upstream 189172 87116760 ~ 87156905 (+) False ecm2
XM_036984304.1 mRNA downstream 274615 87647017 ~ 87658838 (+) True LOC110528678
XR_002474301.2 mRNA downstream 579027 87951429 ~ 87953496 (+) True LOC110528683
XM_036984327.1 mRNA downstream 594167 87966569 ~ 88011485 (+) True dennd6aa
NM_001245099.1 mRNA downstream 681709 88054111 ~ 88058818 (+) True il10
XR_005052690.1 mRNA downstream 748467 88120869 ~ 88127498 (+) True LOC110528686
TU750287 other upstream 243807 87100464 ~ 87102270 (+) True G659706
TU749484 other upstream 824255 86521060 ~ 86521822 (+) True G659136
TU749391 other upstream 933492 86408702 ~ 86412585 (+) False G659058
TU749087 other upstream 1449928 85895826 ~ 85896149 (+) True G658887
TU749085 other upstream 1458956 85886592 ~ 85887121 (+) True G658885
TU750444 other downstream 12497 87384899 ~ 87387283 (+) True nisch
TU751823 other downstream 1050362 88422764 ~ 88427927 (+) True G660790
TU751969 other downstream 1249911 88622313 ~ 88689342 (+) True G660853
TU752005 other downstream 1319492 88691894 ~ 88694076 (+) False G660886
TU752324 other downstream 1444683 88817085 ~ 88817655 (+) True G661162

Expression Profile