RNA id: XM_021610805.2



Basic Information


Item Value
RNA id XM_021610805.2
length 3134
RNA type mRNA
GC content 0.43
exon number 2
gene id si:dkeyp-87e7.4
representative False

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 87410180 ~ 87425169 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATCCAGGTTCCTTTTTTCCCCCCCATCTAAAGCCCCGCCTCTTGTAACTGACTGTCAATTCGCACCACTGTTGTTGCAGCCATTTTAATCTACACTTCAGTTGTAACTACACCGACTGATGCTTGCTTAGGACCGTAGGAAGggtgaagagaaagactGACTTCAGGAGCTCTCAATGGTTTCACCTGAAGGCAGATGTCATGAATTACACAGAACCGGTTGTGGAGAAGGCCGTCAACTCCTGGTCCAGAATAGCCTCAGCGGGACAGACTGTCCTTTTCGAGGCGTTACAGATCCTCAACCCTATGTCGAAAGATCTTTCAGACACCGAGGAACTGGTATCCTTTGTGCAGGGACTTAAGGAAGAGGGCCATAAGCCCAAAGTGCTACGGAGCAAAGATGTGTACGGTTACAGGTCATGTACAGCGAAAACCCTCCCGGAAGACACGTGCTCTATGGACGTAGCCAGCAAGGGTCCAAGGCCAGGCAAGAAGAGGGGACGGAAGAGtaagaagaaaaagaaaagaaaggagTGTAACAATTACGCATCGTGGAGTAGTGCATCAGAATCTCACAAGAGATCTGTCTTTTCCAGACCTCCGATTCTGACTATGCATCCTGCCCAGGTGCAGCAGCAGTACCTGAAACTAACGAACGTTACAGGTTTAACGAGAGGTCACGCTGCGAGAATGCAGATTCACTCTCAACCTCCAACACTTTCGGGAATACCGGTACTGCCGTCGCCGAACACGGGTAGAACACCCAAAGCTGTGGCCATGGTTGGTCAAAGGTACCATGCCTCCTGTCCGGAATGGAACAGAGCCCTTATCGGCGATTCTGCCCCCGTGATCTATGGGAACGGCCGAGGAGTTTACAACTACAAGACTGATGTGTCAAACCACAGACGGTCCTGGACGGATGACCAATCTCTGTGGATGATGAACCGTCAGGAGGAGTGTCGGCTGGACGGGAACAGTTTGAGGTGGAAGGTGATCAAAGTGGACGATTGCGTCACGGTTGAGGAACTGAGAAGGAAGGCCCAGAGGATCTTACAGGTGAACCTGTCCCCTGTGATACAGATACGCCCGCTGTATGAAACTCTAGCTGAATACCAGCGTGAACGATATCTCCAGTAACTTCTTGGTTTAGCCTAGGGTCCATTTTGCAACGAGGCTTAGCGAAGTCCACAGAGGTCTTTCTTTACTGTTGAagccagagggaaaaaaaacatcaGGACGGCGTCATCTGACTGACGACAGTAAAGTACGTTCCTTGAGCAGAGGGGATGATGTCACGACTACCGCGTCAACAAGACTGAAGGGCCTAACGTCGATCAGAAGTTATACACGGTGCTGATTTCAGACACTCAAGCATAGACATTACTGGTCAGAATgtaaatttgtatttttttgttttgttttaaccaGCTTCTGTTTTGTACACTTCTGTTTTGTACACTTCTGTTTTGTACACTTGAGGATGGACTGATAGACTTGGTAAGCAGTGTCACGGCACACTGTAGGATACATTTTTGGTTTGTTGCAATAATTTTTTTAGGTACAGTCTACATGACAATTTTTAAAACAATTTGGTCCCCTGAAATTGTTGTAAATGGGCACCCTTGTTTTCAGGGTTATTGTTTTACAGCTTGATTTTTAGGTCTTCCTGTGTTTGGCCTACTGAGCCATTTATCCCTTTAATCTACTTTTGTGTTTCCTCTTTTCTAGAGTTTGAACTTTCGGGAGCCTCTAAATGTTTGCTGAATGTAAAGCACTCAGATCGTAACAACTCCATTTGCAGGGCAGAGTTAAATTGGCCTTGTTCTTTTcagtaaacctaacccttttTGTAGTGACTGATTTTTATTTTCTCTGAGTAAAGAATTTGAAACCACCCTAttcttgtattattatttttttttaaaccttgatTTTGCCAAACTTTCCAGCAAACCGATATTAACTTTGACTCTGTCGTAGATCTGGTGCAAACTGCCCATCGGTACTAACTGGTAAATCGGTGAAAGTGCACAGTAAACTAAAGCTGTCCGTTTTGTGTAGAAGTTGCCACGGTGTTTTGTGATCTTTCATTAGTTCAGTTGACTGGTTTCTGATGCGCTCCTTCAATGGTTACTTTAAGTTAGACACGTTGTATTGTAGTGGCACAGTCAATCAAGGGTACTTCACAGGGACTGTTATCGGCCACGTCCCAAACAGCACCATGTTCCCTTTACactagtatagggaatagggtcccaatTTGAGACTCGCCCTTCATGTTGGTTTAACCTCTcttactgtatttttttttttttttttttttgtgccaaACATGTCGTTGGTGCTCTCTGTTAGGCCACATGATACGATTCACTGTTCTGATTGGATAGCTGCCTCTTCATCCCGCCTCAACTCTGGATTTAATTGGTGCATTGTTTTTTTGTTGCCAATTTCACCATCCCAGAAGTTGCAAACATTTTAGGCCAAAACTACAGTCTAATTAATTAAGGAACTGGTTAAGTTGAATGATTTGTCAGGTTTATTGTAAGTGAAGAGTTTTTTTTTGTTCAAATTGCTTGAATCGTCATGTTGTAGCCCAAAATCAGGGCCTTTTTAAATGGATAATTTGTTGCCATATGCTGAAAATACCATAAATATGACTGAATGGTTGTGTTCAAGCCAGGGACCAACCAGTCGTTGTGATTGCCGAAGGGGAAGTTAATAAGAGCAGATTGGTATGGCTGTAACGTGTCTTTTCACCCCGTTTATTATTCATCTTTATTTCATTGTACCGGTATGAAATAAAATCACGAGGTGAGCATGGCTGTCTCTTTATAAAGCCTAGTTTATGCAACGCAAAAACACAATTAGTTACTTAAAATGGCATTACCTGAGTTTGCAGGGCTCCACATGTTTGCCGAAGGACCCAGAATGGCCATTTTGCGTAAGGTATGCATTAGGATAAAGTCTAGAGTCCCCTGGTCACATGATAGTGATCAATTTATGCAGGTTCTCAACTATTTATTTTGTATCCTAACAGATGTGTCCATTTCTTGcagttttgattttttttttgagtCTTATTGGATAATTTTCAGAAATTGTTTAATAAAATATCTTCAAGGACTAATTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU750792 lncRNA downstream 2143 87407813 ~ 87408037 (-) True G660072
TU750790 lncRNA downstream 15954 87393976 ~ 87394226 (-) True G660070
TU750785 lncRNA downstream 16923 87392943 ~ 87393257 (-) True G660065
TU750787 lncRNA downstream 19271 87390400 ~ 87390909 (-) True G660067
TU750786 lncRNA downstream 20297 87389590 ~ 87389883 (-) True G660066
TU750803 lncRNA upstream 5689 87428402 ~ 87428640 (-) True G660081
TU751189 lncRNA upstream 71617 87494330 ~ 87573682 (-) True G660396
TU751190 lncRNA upstream 78702 87501415 ~ 87503211 (-) True G660397
TU751199 lncRNA upstream 85809 87508522 ~ 87509362 (-) True G660406
TU751235 lncRNA upstream 166723 87589436 ~ 87589957 (-) True G660435
XM_021610803.2 mRNA downstream 67515 87341189 ~ 87342665 (-) True wu:fb55g09
XM_021610800.2 mRNA downstream 116214 87114104 ~ 87293966 (-) False LOC110528667
XM_021610799.2 mRNA downstream 116216 87114104 ~ 87293964 (-) False LOC110528667
XR_005052725.1 mRNA downstream 350316 87058268 ~ 87059864 (-) True LOC118965396
XM_036984286.1 mRNA downstream 356306 87007438 ~ 87053874 (-) True atrip
XM_036984297.1 mRNA upstream 54676 87477389 ~ 87494213 (-) True LOC110528674
XM_036984300.1 mRNA upstream 72673 87495386 ~ 87554716 (-) False pxk
XM_036984298.1 mRNA upstream 72673 87495386 ~ 87554717 (-) False pxk
XR_005052686.1 mRNA upstream 72673 87495386 ~ 87554717 (-) False pxk
XR_005052687.1 mRNA upstream 72673 87495386 ~ 87554717 (-) False pxk
TU750588 other downstream 116425 87284901 ~ 87293755 (-) True LOC110528667
TU750481 other downstream 402888 87003736 ~ 87007292 (-) True G659824
TU750071 other downstream 776324 86632407 ~ 86633856 (-) True G659543
TU749640 other downstream 1249257 86160242 ~ 86160923 (-) True G659250
TU748305 other downstream 2402675 85006726 ~ 85007505 (-) True G658255
TU752038 other upstream 830350 88253063 ~ 88259405 (-) True LOC110528687
TU752275 other upstream 1336780 88759493 ~ 88759938 (-) True G661128
TU752665 other upstream 1630363 89053076 ~ 89061481 (-) True G661426
TU752543 other upstream 1674334 89097047 ~ 89098578 (-) False G661335
TU753077 other upstream 2035438 89458151 ~ 89459700 (-) True G661773

Expression Profile


XM_021610805.2 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 100.
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XM_021610805.2 Expression in each Bioproject

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XM_021610805.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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