RNA id: XM_036984298.1


Basic Information

Item Value
RNA id XM_036984298.1
length 4858
RNA type mRNA
GC content 0.46
exon number 17
gene id pxk
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 87495386 ~ 87555025 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGAAGTCTGTCTGACCCCAGTGCAGCTGTAAGCAAATGTAGGAGGTCGGGGGGGAATCTATTCTGTCAAGTGTCAACCCTGCCCTTCCTGTCCTCATTTCTAACTAAAATACTCTGCTATCTAATCGGCTAGTTTGACTTCACGTCCATCTGCTTTGGTTTCACACCGGAAGGTGTTTTATCGTTTGGTTCGTTAGTGATCGGGGGCACCGGGATGGCGTTTTTGGAGAAGCAGTCCCCGGGAAGGGTACTATTGGATGATACGGTGGCCCTTACAGCACTGATCGAGGCCAGCCAAAATCTACAATCTCACACGGAATACATAATCCGAGTACAAAGGGGCGTGTGTACAGAAAACAGTTGGCAGGTCATAAAGCGATACAGTGACTTTGATATGCTGAATAGCAGTTTGTTGGTCTCTGGCGTCAGCCTGCCTCTACCACCTAAGAAGTTGCTAGGTAACATGGACAGGGAGTTcatagcagagagacagagaggactacAGGTCTACCTAGACTTTATTACTCAGCATCACATCCTAGCCACCTGCCAACTGGTCAAGAAGTTCCTCGACACCAACAACTACTCTGCCAACTACACAGAAATCGCCTTACAGCAGGTATCCATGTTCTTCAGGTCGGATCCTAAGTGGGAAGTGGTGGAGCCTCTGAAAGACATTGGGTGGAGGATACGGAAGAAATATTTCCTAATCAAAAACAAAGAACAACCCAAGGAACGTCAAGTGTTGAGTTGGGTTGACTTGGGTCCAGATAAATTCCTGTCAGACAAAGACCTTCAGTCGACCATGAAGCTCCTACCCAGCCTCACTAATCCGTACATCTACCCGGTGACGTTTGCCAACACCAGTGAGTTGTCTGCTCTGGTCATCAGGATGTTTAACGAAAAAGGCACTCTGAGGGATCTCATATGTAAGGTGAAGCCTAAAGAGGCCTTCATGAGGAAGTACTGCATCCCAAAGAAGATCCAGGGTCTGGAGCTGCAGCAGATCAGGACGTACGGACGACAGATTCTGgagGTTCTGAGGTTCCTCCATGAGAAAGGTTTTCCGTACGGTCACCTCCATGCCTCTAACATAGTGATAGAAGACAACACGTGTAAAGTACTGGACATAGAGAACAGCCTCCTGGGCCTGCCCTCGTACTACCGGccctacatcacacagttcaggaaAATCAATACGACCGAGAGTATAGACGTATACTCGTTTGGACACTTACTGTATGAAATGACGTACGGAAGACCTCCTGATGCTGTGCCTGTCGACCAGTACCCTGCTGTGACTTACACCTCAGTGGTGTCTGTGCTGCAATCCATCCTGTCCACAGACGCCTGTAAGACTGGGATGCCCACTGTTGCACAACTGCTGCAGACACCGCTGTTCAGCGATGTGCTGCTGTTTCACTCAGAGAAACTCCAGTTCAAGATCCCCACCAAATTAAGAGACGCCTTGAAAACCGCCAAAGAGTGCATGGAAAAGCGACTCCAAGAAGAGCAGAAAACGAACCAGCAGCACAGGAGGCTGACCAGAGCTCAGTCCCACCACGGctcagaggaggagaagaggaggaggaagatactGGCTAGAAAGaaGTCCAGACAGTCAGCCTATGAGAACGAGGAGGATCTCTCTGTGAAGTACAACAACAACTCTGGTTCAGGAGCCAGCTCCCCACcgacctctccctcctcccccacccctcctcaCACTACAGGAGTtgcaccacctcctcctcctcctcctcctctacctcctccaagTGATAACCCTGGCCAGTCCCACGCACCTCcgcatcctcctctccctgggtcaggtcctcctcctgcCAACGGTGTGGGGCGTGGTGCCCTCCTCAGCTCCATCACGTCATTCAGTATAGGCAAACTGAAGAAAGCAGTGACCATCGACCGCAGCATCCAACACTCTGAAGAGGGCCGCTCTTCCTTCTCGTCCTGACCCTGTGGTCCCAGTCACCCCTAAAGGTTACCTGTCGTCCTGACCCTGTGGTCCCAGTCACCCCTAAAGGTTACCTGTCATCCTGACCCTGTGATCCCAGTCACCCCTAAAGTTTACCTCTCGTCCTGACCCTGTGGTCCCAGTCACCCCTAAAGGTTACCTGTCGTCCTGACCCTGTGATCCCAGTCACCCCTAAAGTTTACCTCTCGTCCTGACCCTGTGGTCCCAGTCACCCCTAAAGGTTACCTGTCGTCCTGACCCTGTGGTCCCAGTCACCCCTAAAGGTTACCTGTCGTCCTGACCCTGTGATCCCAGTCACCCCTAAAGGTTACCTGTCGTCCTGACCCTGTGATCCCAGTCACCCCTAAAGGTTACCTGTCGTCCTGACCCTGTGATCCCAGTCACCCCTAAAGGTTACCTGTCGTCCTGACCCTGTGATCCCAGTCACCCCTAAAGGTTACCTGTCGTCCTGCGCAATCACATTTTTGGTCTTTCAGGTTTTTTTTGCTTCTAAATTTAGTTCCCGTCCGATGAGTTGACCCCCAGCCCCGCCCCTTAAGGTTTGAGGTAGGGGATGGGGCATCAACTCCTTTCCAATATGGCCGCCACGTTGGTTCTCCCTTTTAGCACAAACATGACTGGTCAGTGGACTGTACAGGTGGTTTAAAGATGAGGTGGCATCAGCCTGGTGTCTATCTGGAAGACTGCAGTGAATGACTTTATGATTTCAGTGGAATGTCTTTCTTCTTATTTACAGCGACGTGACTTGAATGAAACGTACAGGCCACTGTGAGGGAAGTGATTCAGAAAGCAAACACATGAACCACAGGTGTTTTAGAGGGACTGGGACTCTGACCTGACATCCGACAGCCATGTCATCACAGTGAGACGACTATGAAAGAACTGTCTGGGACTCTGACCTGACATCCACCAACCAACAGCCATGTCATCACAGTGAGACGACTATGAAAGAACTGTCTGTGTCATCACAGTGAGACGACGCTGAAAGAACTGTCTGTGTCATCACAGGGAGACGACTATGAAAGAACTGTCTGTGTCATCACAGGGAGACGACTATGAAAGAACTGTCTGTGTCATCACAGTGAGACGACTATGAAAGAACTGTCTGTGTCATCAGTGAGACGACTGAAAGAATTGTCTGTCATCACAGTGAGACGACTATGAAAGAACTGTCTGTGTCATCACTGTGAGACGACTATGAAagaactgtctgtcatcactgtgAGACGACTATGAAAGAACTGTCTGTGTCATCACAGTGAGACGACTATGAAAGAACTGTCTGTGTCATCACAGTGAGACGACTATGAAAGAACTGTGTCATCACAGTGAGACGACTATGAAAGAACTGTGTCATCACAGTGAGACGACTATGAAATAACTGTATGTGTCATCACAGTGAGACGACTATGAAAGAACTGTGTCATCACAGTGAGACGACTATGAAAGAGCTGTGTCATCACAGTGAGACGACTATGAAAGAACTGTTGGTCTGTTATGTTTATTGTATCTATTATTTTTTTAGCTTTTTGTTTTCTTCTAATGAATGGAAGGAGATGTGATGCTGTTGGACTGTCTGTGTTGCTTATATCTATGTGCCACATTCATCTCTGTGCCTGCGTCAATATATGgccttgtgtcccaaatggcatcccatttcctatatagtgcactactttagtagtAGTCcgctatataggggatagggtgccattttcaaATGCACAGATAGATACAAAAAAAATCAATGGACGTTGCAAGGATTAAAACCTCAGTTTACCCATGGCCGCTTGTTTAGTAAACGAGAACCACCAGAAATCTGTCATCATTCAGTATGCAAAGGATTAACCCAAATGATGACATGCTGTACTTAATGGTATTAATCAGTAACAGTATACAAATTAAGATTCAAATACCTTTTTTAAAAGATTGTTTTGCTTTTTCCTCTCCAAAATGGCAGTTTAAAGATGTTGAAGGATCGACTATTTCTCTGCTGCACTTGACTGAGGGGGAATGCTTTTCTCTACGATCCAGGATTGACACACTTTCTGTGAGCGGTTTACTGGGAGAATGTATCTAAAAAAAATAATCGATTCTGGTGTTTACAAGAAATTAATCCTAATCCTGAAATGAGTTAACTAGCTAATCTGTTATTGATCATCATAATCTGTACCTCTGCTACATCCAACCACTGTCAGAGGAACTGAAGGAACAGTACATCCTCAATCTGTCTGAAAAGTAAAGTTACAATCTGCATAACTGTCTGAAGTGCTTTGTCTTGTCAACATTACAATATTAACTTGTTTTGAAGATTGATATATTGGCACATTCAGGACAATTACTAATTGGCTGCATTTGCACAGGTAGCCCAATTCTTATCTTTGGCCAATAATTGGTCTTTTGGCCAATCAGATCATATcctttgccaataattgggcaacAGATAAGAACTGGGCTGCCCGTGTAAACGCAACCATCGAGTTTCATTATCTCTGCTTATTGTTACCTTCTCTTTACatcactaacagagtggtgtGTCCTTGTATGTAACAATACCCAGAATACATTTCCCCTCATTATGTAATTTTATCcaatctctcacctctctctcttttccagttCAGGGGGTCGTCTAAGCGAGGCTTCAGTATGACATTGTGTTTATTTGGCAGCCGTTTCTCCAATAAGAATGCTCCATGCTGCATAGTTTTATGTAATTAATAATGCTGTTAGTTTATAATTAAGTCTTTCTATCGTCGCTGCCTGCCAACCTTTCTGATTTGCACTGCTGAGTATGGAGTTTTCAAGTAAATACTATACCACCTTTTGGCAGTATGAATTAACAACTCGGTGACAGTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU750803 lncRNA downstream 66746 87428402 ~ 87428640 (-) True G660081
TU750789 lncRNA downstream 70217 87411418 ~ 87425169 (-) True si:dkeyp-87e7.4
TU750792 lncRNA downstream 87349 87407813 ~ 87408037 (-) True G660072
TU750790 lncRNA downstream 101160 87393976 ~ 87394226 (-) True G660070
TU750785 lncRNA downstream 102129 87392943 ~ 87393257 (-) True G660065
TU751235 lncRNA upstream 34719 87589436 ~ 87589957 (-) True G660435
TU751251 lncRNA upstream 79697 87634414 ~ 87635664 (-) True G660449
TU751266 lncRNA upstream 103865 87658582 ~ 87661413 (-) False G660460
TU751267 lncRNA upstream 103865 87658582 ~ 87661413 (-) True G660460
TU751275 lncRNA upstream 110163 87664880 ~ 87665705 (-) True G660464
XM_036984297.1 mRNA downstream 1173 87477389 ~ 87494213 (-) True LOC110528674
XM_021610805.2 mRNA downstream 72673 87410180 ~ 87422713 (-) False si:dkeyp-87e7.4
XM_021610803.2 mRNA downstream 152721 87341189 ~ 87342665 (-) True wu:fb55g09
XM_021610800.2 mRNA downstream 201420 87114104 ~ 87293966 (-) False LOC110528667
XM_021610799.2 mRNA downstream 201422 87114104 ~ 87293964 (-) False LOC110528667
XM_021610808.2 mRNA upstream 573 87555290 ~ 87565881 (-) False rpp14
XM_021610807.2 mRNA upstream 579 87555296 ~ 87556594 (-) True LOC110528675
XM_021610809.2 mRNA upstream 1400 87556117 ~ 87565879 (-) True rpp14
XM_036984302.1 mRNA upstream 13078 87567795 ~ 87603200 (-) False abhd6a
XR_005052688.1 mRNA upstream 13078 87567795 ~ 87603200 (-) False abhd6a
TU750588 other downstream 201631 87284901 ~ 87293755 (-) True LOC110528667
TU750481 other downstream 488094 87003736 ~ 87007292 (-) True G659824
TU750071 other downstream 861530 86632407 ~ 86633856 (-) True G659543
TU749640 other downstream 1334463 86160242 ~ 86160923 (-) True G659250
TU748305 other downstream 2487881 85006726 ~ 85007505 (-) True G658255
TU752038 other upstream 698346 88253063 ~ 88259405 (-) True LOC110528687
TU752275 other upstream 1204776 88759493 ~ 88759938 (-) True G661128
TU752665 other upstream 1498359 89053076 ~ 89061481 (-) True G661426
TU752543 other upstream 1542330 89097047 ~ 89098578 (-) False G661335
TU753077 other upstream 1903434 89458151 ~ 89459700 (-) True G661773

Expression Profile