RNA id: XM_036984304.1


Basic Information

Item Value
RNA id XM_036984304.1
length 1969
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110528678
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 87647017 ~ 87658838 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagagactgaaacagagaaacagagagagagagagagagagactgtagccAACATTACAGAAGATATGTGTGACGTCTTTTTTTAATCATACATCCAAAAAGGAAGTGTTGTGTTTCAGAtagcttaaacacacacacacagcagctgctACTTCTCCTGGCTCTCTGTACCCTCAGACAGTCTGTTGTTGACCTCTCAGTGAGCATGTCGGGTAGTGTTAGTGTTTGGAGGGTAGTGAGCTGGATGGTGCTGGGCATGGTTCTGGGGCTCAGTGGTGGGGGCTCAGCCCTGAAGATCTGCACCTTCAACATCCAGTCCTTTGGAGAGAAGAAAATAGAGAAGCCAGAGGTGGTTGATGTCATATTGGCTCTGATCGCTCGCTGTGACATCATGCTGGTGATGGAGATTAAAGATCTCAGTGCGAAGGCTTTCCCTCAGCTCATGACTCAACTCAACAGTGACTACAGCTCCAGGAAGAATGAGTATAACTATGTGATCAGTGACAGACTGGGACGTAAGTCCTACAAGGAGCAGTACGCCTTTATCTACAGACAGAGGCTGGTGTCAGTGAAGGAAGTGTACCAGTACCCTGACACCCAACCTGGAGATGAGGATGCCTTCTCCAGGGAACCTTTCATCGTCTGGTTCTCTTCCCCCAAAACAGCCGTCCAGGACTTTGTGATCATCCCGATCCACACCACTCCAGAGACGTCCGTCAGGGAGATAAATGAACTGTATGATGTGTTCCAAGATGTCAAGCAACGATGGACCTCAAAgAATGTGATCATCATGGGCGACTTCAATGCGGCCTGCGGCTACGTACCCAAGAAGCAGTGGAGCAGCATCCGCCTGCGGTCTGACAGCAGCTTCCTGTGGCTGACGGGTGACACCATCGACACCACCGTCAAGGAGTCCACAGACTGTGCCTATGACAGGGTTGTCCTCCACGGGGACAAGATGATCCAGGCAGTCAACCCAACCTCTCTGGATGTGTTTGACTTCAGACGGGCCTACGGACTAACCGAGCTACAGgCCCTGGCGGTGAGTGACCACTACCCAGTGTGCATCACTGTGAAGGCCGCTCCGAGGAATAAGGGTTAACGTCTTGTCCTCGTAACGGTACCGTCCTGAGGACGTCTCGGTGTCCCTCGGGTGGTCTGTGTGCGTCCTGCAGTGTTTGCTTTGCTCCAGTCCAGAGCTAATTAATCCCAGAAGCATGGTCACTGAGCTGCACTCTGTGCTTCAAGATTATTATACTTTTGTGTTTTATATTCGTTTTTATTTCTAttagtatttttttgttgttgttgacttaaTCTAGTAGTTTTTATTCTATTTGAGTTTTCTAAAAACATTTCTATTTGGTTTTTGATATTATTTAGTTTTAGTGTTAGCCTGGGTGGCTAATAGCTAGGAGGCATGTATGTGTTGTAGGTTGTATTTCTAGTTGTCTCAGACCTAGATTATAGATTATTACAGATTGCATTACAGATTAGACAGACCTAGACCCAGAGAAACAGGCCTATTGAAACATCTCCTGACAGCATTTACCTGACAGATTCAAAAGCTTGAAAAACccattagaaaaaaaatctaaaactaaACATAGTGGGTTTTTCATGTAGTTTAGTTTTGGAATCAAAAATAATAGTTTCAGTACAGTTTTAGTTTTTAAAGTGGGTTtcttaattatatatatatatttttttaataaatatttttttcatgatTAGTTTTAGTTTCCTATAATAACGTTGGCGTACTTTGCTCCAGCCACTCAgaggttaatgtgtgtgtttccttgTTGCTAGGCGACCAGCTGTGCCTGTGACCAGCTCATTTGAAGCATCTTGCTTTTCTTCTCCCCATGCTTTGTTTACTGCATCACATGGCAGCTTTTTCCTGCCATCCTATtaccaagtagtgcactatatagggaatagggccctggtctatagtagtg

Function

GO: NA

KEGG:

id description
K11995 DNASE1L; deoxyribonuclease-1-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU750930 lncRNA upstream 8795 87635824 ~ 87638222 (+) True G660175
TU750925 lncRNA upstream 9324 87629218 ~ 87637693 (+) True G660171
TU750882 lncRNA upstream 14638 87574253 ~ 87632379 (+) True G660137
TU750919 lncRNA upstream 15767 87625437 ~ 87631250 (+) True G660169
TU750875 lncRNA upstream 77488 87567812 ~ 87569529 (+) True G660133
TU750948 lncRNA downstream 14628 87673466 ~ 87673723 (+) True G660193
TU750951 lncRNA downstream 25732 87684570 ~ 87686074 (+) False G660196
TU750952 lncRNA downstream 25732 87684570 ~ 87686074 (+) True G660196
TU750961 lncRNA downstream 27617 87686455 ~ 87687178 (+) True G660202
TU750964 lncRNA downstream 34392 87693230 ~ 87693969 (+) True G660205
XM_036984294.1 mRNA upstream 261694 87346080 ~ 87385323 (+) False nisch
XM_036984295.1 mRNA upstream 261694 87346080 ~ 87385323 (+) False nisch
XM_036984296.1 mRNA upstream 274615 87346077 ~ 87372402 (+) False nisch
XM_036984289.1 mRNA upstream 331901 87293964 ~ 87315116 (+) False nol8
XM_036984288.1 mRNA upstream 331901 87293996 ~ 87315116 (+) True nol8
XR_002474301.2 mRNA downstream 292591 87951429 ~ 87953496 (+) True LOC110528683
XM_036984327.1 mRNA downstream 307731 87966569 ~ 88011485 (+) True dennd6aa
NM_001245099.1 mRNA downstream 395273 88054111 ~ 88058818 (+) True il10
XR_005052690.1 mRNA downstream 462031 88120869 ~ 88127498 (+) True LOC110528686
XM_036984332.1 mRNA downstream 580089 88238927 ~ 88241064 (+) True LOC110528688
TU750444 other upstream 259734 87384899 ~ 87387283 (+) True nisch
TU750287 other upstream 544747 87100464 ~ 87102270 (+) True G659706
TU749484 other upstream 1125195 86521060 ~ 86521822 (+) True G659136
TU749391 other upstream 1234432 86408702 ~ 86412585 (+) False G659058
TU749087 other upstream 1750868 85895826 ~ 85896149 (+) True G658887
TU751823 other downstream 763926 88422764 ~ 88427927 (+) True G660790
TU751969 other downstream 963475 88622313 ~ 88689342 (+) True G660853
TU752005 other downstream 1033056 88691894 ~ 88694076 (+) False G660886
TU752324 other downstream 1158247 88817085 ~ 88817655 (+) True G661162
TU752344 other downstream 1314146 88972984 ~ 88975830 (+) True G661172

Expression Profile