RNA id: TU752300


Basic Information

Item Value
RNA id TU752300
length 1436
lncRNA type read_through
GC content 0.52
exon number 2
gene id LOC110528691
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 88777804 ~ 88781772 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatttgtcaaacagcagtcaagcatTAATCATCatatcaccagaataagacccccgatatttattggaaaagagcatcaagctcatcaccttgTGCACATAAAAGGTATTTCTAGCATATTTAATTTTACACAAAAACATCCCACCATGTCTTAACAAAAATATGATCACTTCactcgcataaaaactgtggatggaaaccgAGGGAGTTATTTGAAGAGTTTCTGGTCTGGATCTGCCTGTAGATAGATGAACTCTTCCACGGGTGAGGTTGAGCCTGACGACCAACAGCTGTTTCTACAAGTAAACACCATCACAGTACCAAACTCCAGCCCCGGATTCATCTCTACATCCCCCATCTCTACCGCCGACCTTGACCCAGTGTCTGTCCTCTGCAGCAGGCTGACCAGAGCAGGCATCAGTTGTAACTCAAACACCCTGATTCCTCCACAGTGACAGCAGCCAGGTTTAATCCAAGGAAGGTCCGAGGGGGGGTCAGACAAGAAGAGAGGAGACCCGTGCCAGCTGTACCGCAACACCTGCTCCGGACACACAGAGATCCTCTTCATGAAGCGGGAGAACACTGCGTCTCCATGTCTGGGGTTGTCCTTCTcgtacctctcctcccctcctcccccctcagtgCTCCCGATcatccctactccctctctctgctcgtACTCCCTCAGCAGAGTCTCAGCGTGCTCCAGGTCTGACTGACCACCCAGGTCCGTCTCATCCACCACACTGATGTAGAAAGGTCTATAGGTAGGGATGTTACCCGttacctccccttcctcctccaccacctttTCTCCTCCTTCCAGACTGAGTCCCTGAAGCTTGCCGCTCACATCCAGCTCAAAGGAGGTCCCGGTGAGTAAGAGGATCTCAGGATCCTTTCCCCCCATATGAGCTTGGTTCTGGGCCTTGTCCCATCCATCTCCCCCCTCCTGCTTGTCCTCTTCCTCACCCCAGTCATCAGTCCCATCACACCAGTATGTGGTTGTCATGGGAACCTCTTTAACTGGGGCTTGGCCTGGAGGTTGGACCACATGGTTGGTTCTGACCTCTGATTCCAGACACTGAGAACGCAGAACCCTCCAGCTCTCCGGTTGTCCGCTGCACTGTGGCCCGGGGCAGGCGAACACATTCAGGGTGCGGTGGTAGGGAGACGCCGCTAGGGGGCAGTACACCTGCACCACATGGGCCATGACCGCGCTGCATAGCCTACAGCGTGGACGTTGCCATGATATCACTGGAAGCTTGTCCGGTTGGTCGCCAATTTTGTTCGTCAAGTAAGACATCGGATATCGCTTTGAATCGATTTCCCCATCACACAGTCCGATGAGAACTGCCGCGTCAACTGCAGCCATACTATTCTACTATTGTTTAGTTGTTAGAACTGGACTTGAAGCCCTTCGCCATGTTGAAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU752277 lncRNA upstream 15931 88761584 ~ 88761873 (+) True G661130
TU752264 lncRNA upstream 28979 88748207 ~ 88748825 (+) True G661118
TU752006 lncRNA upstream 83728 88693790 ~ 88694076 (+) True G660886
TU751971 lncRNA upstream 154566 88622480 ~ 88623238 (+) True G660854
TU751964 lncRNA upstream 161205 88616124 ~ 88616599 (+) True G660848
TU752315 lncRNA downstream 15690 88795080 ~ 88797770 (+) True G661157
TU752327 lncRNA downstream 45833 88825223 ~ 88825664 (+) True G661164
TU752328 lncRNA downstream 46310 88825700 ~ 88826190 (+) True G661165
TU752329 lncRNA downstream 46970 88826360 ~ 88826595 (+) True G661166
TU752330 lncRNA downstream 47594 88826984 ~ 88827278 (+) True G661167
NM_001160678.2 mRNA upstream 251358 88517435 ~ 88526446 (+) False pdrg1
XM_036984332.1 mRNA upstream 536740 88238927 ~ 88241064 (+) True LOC110528688
XR_005052690.1 mRNA upstream 650306 88120869 ~ 88127498 (+) True LOC110528686
NM_001245099.1 mRNA upstream 718986 88054111 ~ 88058818 (+) True il10
XM_036984327.1 mRNA upstream 766319 87966569 ~ 88011485 (+) True dennd6aa
XM_036984349.1 mRNA downstream 11380 88790770 ~ 88852155 (+) True cass4
XM_036984351.1 mRNA downstream 73706 88853096 ~ 88974945 (+) False LOC110510506
XM_036984350.1 mRNA downstream 73707 88853097 ~ 88974945 (+) False LOC110510506
XM_036984352.1 mRNA downstream 73707 88853097 ~ 88974945 (+) False LOC110510506
XR_005052692.1 mRNA downstream 73707 88853097 ~ 88974945 (+) True LOC110510506
TU752005 other upstream 83728 88691894 ~ 88694076 (+) False G660886
TU751969 other upstream 88462 88622313 ~ 88689342 (+) True G660853
TU751823 other upstream 349877 88422764 ~ 88427927 (+) True G660790
TU750444 other upstream 1390521 87384899 ~ 87387283 (+) True nisch
TU750287 other upstream 1675534 87100464 ~ 87102270 (+) True G659706
TU752324 other downstream 37695 88817085 ~ 88817655 (+) True G661162
TU752344 other downstream 193594 88972984 ~ 88975830 (+) True G661172
TU752338 other downstream 196548 88975938 ~ 88980209 (+) False LOC118965328
TU752740 other downstream 399903 89179293 ~ 89180204 (+) True G661489
TU752742 other downstream 401424 89180814 ~ 89182037 (+) True G661491

Expression Profile