Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00034447 |
| length | 292 |
| lncRNA type | retained_intron |
| GC content | 0.46 |
| exon number | 3 |
| gene id | XLOC_017302 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 23670494 ~ 23714017 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0007059 | chromosome segregation | biological_process |
| GO:1904888 | cranial skeletal system development | biological_process |
| GO:0060271 | cilium assembly | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0005813 | centrosome | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040730-1 | Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within cilium assembly and cranial skeletal system development. Predicted to be active in centrosome; cytoplasm; and nucleus. Is expressed in forebrain; head; midbrain; and retina. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis; asphyxiating thoracic dystrophy; and short-rib thoracic dysplasia 6 with or without polydactyly. Orthologous to human NEK1 (NIMA related kinase 1). |
| ensembl_id | ENSDART00000152910 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00036585 | lncRNA | upstream | 24501 | 23662006 ~ 23662547 (+) | True | XLOC_017301 |
| TCONS_00034440 | lncRNA | upstream | 114259 | 23542178 ~ 23572789 (+) | False | XLOC_017299 |
| TCONS_00034430 | lncRNA | upstream | 418361 | 23254477 ~ 23268687 (+) | True | XLOC_017296 |
| TCONS_00034423 | lncRNA | upstream | 655312 | 23026257 ~ 23031736 (+) | True | XLOC_017289 |
| TCONS_00034415 | lncRNA | upstream | 1489881 | 22194193 ~ 22197167 (+) | True | XLOC_017285 |
| TCONS_00034451 | lncRNA | downstream | 166251 | 23855055 ~ 23855897 (+) | True | XLOC_017305 |
| TCONS_00036586 | lncRNA | downstream | 221618 | 23910422 ~ 23912606 (+) | True | XLOC_017306 |
| TCONS_00034454 | lncRNA | downstream | 443269 | 24132073 ~ 24138562 (+) | False | XLOC_017309 |
| TCONS_00034455 | lncRNA | downstream | 444604 | 24133408 ~ 24138274 (+) | True | XLOC_017309 |
| TCONS_00034456 | lncRNA | downstream | 677143 | 24365947 ~ 24373933 (+) | True | XLOC_017310 |
| TCONS_00034445 | mRNA | upstream | 9669 | 23670494 ~ 23677379 (+) | False | XLOC_017302 |
| TCONS_00034444 | mRNA | upstream | 19335 | 23658791 ~ 23667713 (+) | True | XLOC_017300 |
| TCONS_00034443 | mRNA | upstream | 21289 | 23657860 ~ 23665759 (+) | False | XLOC_017300 |
| TCONS_00034437 | mRNA | upstream | 38020 | 23498255 ~ 23649028 (+) | False | XLOC_017299 |
| TCONS_00034439 | mRNA | upstream | 39435 | 23501535 ~ 23647613 (+) | False | XLOC_017299 |
| TCONS_00034448 | mRNA | downstream | 53770 | 23742574 ~ 23836967 (+) | True | XLOC_017303 |
| TCONS_00034450 | mRNA | downstream | 166221 | 23855025 ~ 23860808 (+) | False | XLOC_017305 |
| TCONS_00034452 | mRNA | downstream | 258200 | 23947004 ~ 23956014 (+) | True | XLOC_017307 |
| TCONS_00034453 | mRNA | downstream | 271721 | 23960525 ~ 23964383 (+) | True | XLOC_017308 |
| TCONS_00034458 | mRNA | downstream | 759203 | 24448007 ~ 24450177 (+) | True | XLOC_017312 |
| TCONS_00034433 | other | upstream | 280524 | 23395794 ~ 23406524 (+) | False | XLOC_017297 |
| TCONS_00034428 | other | upstream | 454244 | 23232690 ~ 23232804 (+) | True | XLOC_017294 |
| TCONS_00034424 | other | upstream | 610731 | 23076201 ~ 23076317 (+) | True | XLOC_017290 |
| TCONS_00034397 | other | upstream | 2492284 | 21194649 ~ 21194764 (+) | True | XLOC_017276 |
| TCONS_00034393 | other | upstream | 2670149 | 21008353 ~ 21016899 (+) | True | XLOC_017272 |
| TCONS_00034449 | other | downstream | 78149 | 23766953 ~ 23767069 (+) | True | XLOC_017304 |
| TCONS_00034463 | other | downstream | 1548205 | 25237009 ~ 25237124 (+) | True | XLOC_017317 |
| TCONS_00034470 | other | downstream | 1777766 | 25466570 ~ 25469149 (+) | True | XLOC_017320 |
| TCONS_00034473 | other | downstream | 1844260 | 25533064 ~ 25555015 (+) | False | XLOC_017322 |
| TCONS_00034475 | other | downstream | 1870074 | 25558878 ~ 25561817 (+) | True | XLOC_017323 |
