RNA id: TCONS_00034451


Basic Information

Item Value
RNA id TCONS_00034451
length 521
lncRNA type retained_intron
GC content 0.34
exon number 3
gene id XLOC_017305
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 23855025 ~ 23860808 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACTAGGCTGATAAAAAATGGCGTCTAGGTGCAAAATACATTTAACAGTGGCTTATTTGCTCATCCTGTGTATTCTAGCCAGTGCTCAATCAAAACAAATGACAACGGAAACCGTCGTGTTAAACGTTACAGCGCTCAGTGAAATTAACCAGACTAAGTACAACGTACAGATTAATTTGAATATTGGTCTTCTGGACAATGACATATTTATTAACGGAGCTCCTCTCAAGCCTTCAGGAGTCACGAGGATGACATGTCCTGCTCTGCTGTGTAGGACTATTAGTTTTACTGTCTTTCTTAAATATTAATCAATTGTATTCATGTATTTAAAGTGCAGTCAAGAGAAAGAGCGACCAATCATatgactgtttttttcttttcttgttaaCACTTAGTAATGTCCCATCTGTGTATGTTACTTATGGTATACTGAAAAGCATcttaaaatatctaaaacttcTAAACtcttaattaatgtttatttctacATGTATTGTGAATTAATAAAATGTTGGTCAATG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5900 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GINM1 (glycoprotein integral membrane 1).

Ensembl:

ensembl_id ENSDART00000153309

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034447 lncRNA upstream 166251 23687048 ~ 23688804 (+) True XLOC_017302
TCONS_00036585 lncRNA upstream 192508 23662006 ~ 23662547 (+) True XLOC_017301
TCONS_00034440 lncRNA upstream 282266 23542178 ~ 23572789 (+) False XLOC_017299
TCONS_00034430 lncRNA upstream 586368 23254477 ~ 23268687 (+) True XLOC_017296
TCONS_00034423 lncRNA upstream 823319 23026257 ~ 23031736 (+) True XLOC_017289
TCONS_00036586 lncRNA downstream 54525 23910422 ~ 23912606 (+) True XLOC_017306
TCONS_00034454 lncRNA downstream 276176 24132073 ~ 24138562 (+) False XLOC_017309
TCONS_00034455 lncRNA downstream 277511 24133408 ~ 24138274 (+) True XLOC_017309
TCONS_00034456 lncRNA downstream 510050 24365947 ~ 24373933 (+) True XLOC_017310
TCONS_00036587 lncRNA downstream 533725 24389622 ~ 24412818 (+) False XLOC_017311
TCONS_00034448 mRNA upstream 18088 23742574 ~ 23836967 (+) True XLOC_017303
TCONS_00034446 mRNA upstream 141038 23676649 ~ 23714017 (+) False XLOC_017302
TCONS_00034445 mRNA upstream 177676 23670494 ~ 23677379 (+) False XLOC_017302
TCONS_00034444 mRNA upstream 187342 23658791 ~ 23667713 (+) True XLOC_017300
TCONS_00034443 mRNA upstream 189296 23657860 ~ 23665759 (+) False XLOC_017300
TCONS_00034452 mRNA downstream 91107 23947004 ~ 23956014 (+) True XLOC_017307
TCONS_00034453 mRNA downstream 104628 23960525 ~ 23964383 (+) True XLOC_017308
TCONS_00034458 mRNA downstream 592110 24448007 ~ 24450177 (+) True XLOC_017312
TCONS_00034460 mRNA downstream 1369215 25225112 ~ 25231191 (+) False XLOC_017316
TCONS_00034461 mRNA downstream 1369305 25225202 ~ 25271878 (+) False XLOC_017316
TCONS_00034449 other upstream 87986 23766953 ~ 23767069 (+) True XLOC_017304
TCONS_00034433 other upstream 448531 23395794 ~ 23406524 (+) False XLOC_017297
TCONS_00034428 other upstream 622251 23232690 ~ 23232804 (+) True XLOC_017294
TCONS_00034424 other upstream 778738 23076201 ~ 23076317 (+) True XLOC_017290
TCONS_00034397 other upstream 2660291 21194649 ~ 21194764 (+) True XLOC_017276
TCONS_00034463 other downstream 1381112 25237009 ~ 25237124 (+) True XLOC_017317
TCONS_00034470 other downstream 1610673 25466570 ~ 25469149 (+) True XLOC_017320
TCONS_00034473 other downstream 1677167 25533064 ~ 25555015 (+) False XLOC_017322
TCONS_00034475 other downstream 1702981 25558878 ~ 25561817 (+) True XLOC_017323
TCONS_00034480 other downstream 1725009 25580906 ~ 25581456 (+) True XLOC_017327

Expression Profile

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