RNA id: TU650412



Basic Information


Item Value
RNA id TU650412
length 767
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G570651
representative False

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 7575295 ~ 7580028 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cctatgatgtcaagcaaagaggcactgagtttgaaggtaggccttgaaatacatccacaggtgcacctccaattgactcaaataatgtcaattagcctatcagaagcttctaaagccatgacatcatttcctaGGACTTTTCCACGCTGTTTAATGGCActgtcaacttactgtatgtaaacttctgaccgactggaattgtgaccaggtgcacgccggcctttgggtgaccaggtgcacatggtccttttgggtgaccaggtgcacatggtcctttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacgccggtctttgggtgaccaggtgcacaagttccatttgggtgaccaggtgcacaagttccatttgggtgaccaggtgcacgcggttcataacagcgcggttatctgctttaatgtccgaggaggggtgcttaagtgtgggtgccctggttcacctggtatgcgaggttgtggaggtggggggggtcccctgctggtgtcatccccgaaatagaggggtgatacccgggtggtgagtaagggcctacaagcctggaggtcaatagctccagggggtaagctctactgtcatgtccgtaaatagagtggtgttacccgggttttgaaccatattttaatttttgggttaccagatgcacacgggtcttttggaaaacaatcacaatctgcatccatcgtaatatatgaaactgtatataaagca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU650395 lncRNA upstream 23421 7551552 ~ 7551874 (+) True G570645
TU650388 lncRNA upstream 37491 7537492 ~ 7537804 (+) True G570639
TU650387 lncRNA upstream 37921 7536913 ~ 7537374 (+) True G570638
TU650386 lncRNA upstream 39918 7534984 ~ 7535377 (+) True G570637
TU650376 lncRNA upstream 66200 7508630 ~ 7509095 (+) True G570627
TU650404 lncRNA downstream 2674 7578788 ~ 7580028 (+) True G570651
TU650414 lncRNA downstream 3973 7580087 ~ 7581423 (+) True LOC118965425
TU650214 lncRNA downstream 8422 7584536 ~ 7585026 (+) True G570516
TU650421 lncRNA downstream 39277 7615391 ~ 7615783 (+) True G570659
TU650426 lncRNA downstream 52521 7628635 ~ 7629598 (+) True G570662
XM_036982330.1 mRNA upstream 51454 7504010 ~ 7523841 (+) True LOC110495398
XM_036982328.1 mRNA upstream 104027 7467740 ~ 7471268 (+) True LOC118965230
XM_036982322.1 mRNA upstream 109616 7434926 ~ 7465679 (+) False LOC110496979
XR_005052751.1 mRNA downstream 5000 7581114 ~ 7582949 (+) False LOC118965425
XR_005052752.1 mRNA downstream 7406 7583520 ~ 7583673 (+) True LOC118965426
XM_036982331.1 mRNA downstream 48360 7624474 ~ 7632875 (+) False LOC110495388
XM_036982332.1 mRNA downstream 48477 7624591 ~ 7632875 (+) False LOC110495388
XM_036982333.1 mRNA downstream 48477 7624591 ~ 7632875 (+) True LOC110495388
TU650360 other upstream 87697 7487205 ~ 7487598 (+) True G570616
TU650345 other upstream 134547 7438559 ~ 7440748 (+) True G570601
TU650254 other upstream 268644 7304962 ~ 7306651 (+) True G570541
TU649938 other upstream 741001 6833001 ~ 6834294 (+) True LOC110495616
TU649970 other upstream 809149 6761084 ~ 6766146 (+) True LOC110528754
TU650554 other downstream 246999 7823113 ~ 7826340 (+) True LOC118965232
TU650514 other downstream 353674 7929788 ~ 7931372 (+) False LOC110495467
TU650510 other downstream 353739 7929853 ~ 7931372 (+) False LOC110495467
TU650663 other downstream 437752 8013866 ~ 8015576 (+) False LOC110504762
TU650647 other downstream 459558 8035672 ~ 8053731 (+) True LOC110497026

Expression Profile