RNA id: TU650404


Basic Information

Item Value
RNA id TU650404
length 1070
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G570651
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 7575295 ~ 7580028 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gattaatagcaatctgcatccatcgtgatttcttaaactgtctaaaaagcactcaaggacggccctgacagagagagggccgtagtggggcactcccctagcgggctatatcaatagaatgacgggtaaaagtatttaaaacccttttataatttttgggttaccagatgcacgttttcaatcaccaggtgcacggaggaaaatgagcatttgcatccatagtcatgttttaaaccgtccataaagcactcttggccggccccggcagagagagaaagagatggtgaaaaaaaaaaaatatcatcatcagaccttccataaataattcggaccggcccccattgctaaaggtccgtagtagggtgcatcattatcggacatgaatctcgggaacaccgctaaccgcatagagaaccgtgttttgggttaccagatgcacgttttcaatcaccagttgcacggagaaaaaaaaagtaatcataccttccataaataattcaggccgacccccattgaaaaaggtccgtagtagggtgcatcattatcggacatgtatatctgtaacaccggcaagcgcattgagaaccgcatttttgggttaccagatgcacgttttcaatcaccaggtgcacggctgtgaaaagtgggactctgtcattttttcgaccaatttctgtaattttcaaaaaatgattaaaaatacttcccgaagggctagaggtcccaaatttcgtctcataccctctctcgtgatgggcaacaattacataatgtaaaaaaaatttcgcatccacaggaacctatgcatcctgtgacattcacttttttcccaaaacttgaaacacgatttcctattaaaatgttttatacaaaaacgtttttaattgaatgtaaaggctcgtctatttatgcactttcgtgcaaaaaaaaccccatcaagatcggatgtgtactttttgatttatcacgtttttgttgaatttgacccccgatggtggggcgcacagaagccctgtgaggttcagggcttcatcgatatttggcctgttttggattacacactcagtggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU650401 lncRNA upstream 2674 7575295 ~ 7576114 (+) False G570651
TU650411 lncRNA upstream 2674 7575295 ~ 7576114 (+) False G570651
TU650412 lncRNA upstream 2674 7575295 ~ 7576114 (+) False G570651
TU650395 lncRNA upstream 26914 7551552 ~ 7551874 (+) True G570645
TU650388 lncRNA upstream 40984 7537492 ~ 7537804 (+) True G570639
TU650414 lncRNA downstream 59 7580087 ~ 7581423 (+) True LOC118965425
TU650214 lncRNA downstream 4508 7584536 ~ 7585026 (+) True G570516
TU650421 lncRNA downstream 35363 7615391 ~ 7615783 (+) True G570659
TU650426 lncRNA downstream 48607 7628635 ~ 7629598 (+) True G570662
TU650432 lncRNA downstream 64731 7644759 ~ 7659187 (+) True G570665
XM_036982330.1 mRNA upstream 54947 7504010 ~ 7523841 (+) True LOC110495398
XM_036982328.1 mRNA upstream 107520 7467740 ~ 7471268 (+) True LOC118965230
XM_036982322.1 mRNA upstream 113109 7434926 ~ 7465679 (+) False LOC110496979
XR_005052751.1 mRNA downstream 1086 7581114 ~ 7582949 (+) False LOC118965425
XR_005052752.1 mRNA downstream 3492 7583520 ~ 7583673 (+) True LOC118965426
XM_036982331.1 mRNA downstream 44446 7624474 ~ 7632875 (+) False LOC110495388
XM_036982332.1 mRNA downstream 44563 7624591 ~ 7632875 (+) False LOC110495388
XM_036982333.1 mRNA downstream 44563 7624591 ~ 7632875 (+) True LOC110495388
TU650360 other upstream 91190 7487205 ~ 7487598 (+) True G570616
TU650345 other upstream 138040 7438559 ~ 7440748 (+) True G570601
TU650254 other upstream 272137 7304962 ~ 7306651 (+) True G570541
TU649938 other upstream 744494 6833001 ~ 6834294 (+) True LOC110495616
TU649970 other upstream 812642 6761084 ~ 6766146 (+) True LOC110528754
TU650554 other downstream 243085 7823113 ~ 7826340 (+) True LOC118965232
TU650514 other downstream 349760 7929788 ~ 7931372 (+) False LOC110495467
TU650510 other downstream 349825 7929853 ~ 7931372 (+) False LOC110495467
TU650663 other downstream 433838 8013866 ~ 8015576 (+) False LOC110504762
TU650647 other downstream 455644 8035672 ~ 8053731 (+) True LOC110497026

Expression Profile