RNA id: TU650443


Basic Information

Item Value
RNA id TU650443
length 202
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G570674
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 7660122 ~ 7660323 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTCCGTGAGCTCAACATTTCAACATTATGTAAGACAAGCAAGGAGATTTCAGTGTCCTTACTCGAATGGTCTCTGGATTAATGGCAGTGATGTTAGATGAATGTTTAGTCTGTGAATGTCCTTTCAGCTGACTGTACACAGACTTACTGAATTCCTCTTAGCATTAAGTAAAACGTCAGATTTATGTTGCTCTGAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU650432 lncRNA upstream 935 7644759 ~ 7659187 (+) True G570665
TU650438 lncRNA upstream 3507 7654851 ~ 7656615 (+) True G570671
TU650426 lncRNA upstream 30524 7628635 ~ 7629598 (+) True G570662
TU650421 lncRNA upstream 44339 7615391 ~ 7615783 (+) True G570659
TU650214 lncRNA upstream 75096 7584536 ~ 7585026 (+) True G570516
TU650448 lncRNA downstream 6122 7666445 ~ 7666910 (+) True G570679
TU650453 lncRNA downstream 29891 7690214 ~ 7691001 (+) True G570683
TU650474 lncRNA downstream 47869 7708192 ~ 7709171 (+) False G570695
TU650472 lncRNA downstream 47916 7708239 ~ 7709321 (+) False G570695
TU650473 lncRNA downstream 47916 7708239 ~ 7709171 (+) True G570695
XM_036982331.1 mRNA upstream 27247 7624474 ~ 7632875 (+) False LOC110495388
XM_036982332.1 mRNA upstream 27247 7624591 ~ 7632875 (+) False LOC110495388
XM_036982333.1 mRNA upstream 27247 7624591 ~ 7632875 (+) True LOC110495388
XR_005052752.1 mRNA upstream 76449 7583520 ~ 7583673 (+) True LOC118965426
XR_005052751.1 mRNA upstream 77173 7581114 ~ 7582949 (+) False LOC118965425
XM_036982336.1 mRNA downstream 13222 7673545 ~ 7676737 (+) False LOC118965231
XM_036982337.1 mRNA downstream 13222 7673545 ~ 7676737 (+) False LOC118965231
XM_036982338.1 mRNA downstream 13222 7673545 ~ 7676737 (+) True LOC118965231
XM_036982345.1 mRNA downstream 69143 7729466 ~ 7734571 (+) False LOC110491192
XM_036982344.1 mRNA downstream 69296 7729619 ~ 7734571 (+) True LOC110491192
TU650360 other upstream 172524 7487205 ~ 7487598 (+) True G570616
TU650345 other upstream 219374 7438559 ~ 7440748 (+) True G570601
TU650254 other upstream 353471 7304962 ~ 7306651 (+) True G570541
TU649938 other upstream 825828 6833001 ~ 6834294 (+) True LOC110495616
TU649970 other upstream 893976 6761084 ~ 6766146 (+) True LOC110528754
TU650554 other downstream 162790 7823113 ~ 7826340 (+) True LOC118965232
TU650514 other downstream 269465 7929788 ~ 7931372 (+) False LOC110495467
TU650510 other downstream 269530 7929853 ~ 7931372 (+) False LOC110495467
TU650663 other downstream 353543 8013866 ~ 8015576 (+) False LOC110504762
TU650647 other downstream 375349 8035672 ~ 8053731 (+) True LOC110497026

Expression Profile