RNA id: TU650584



Basic Information


Item Value
RNA id TU650584
length 473
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G570776
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 7972484 ~ 7975265 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGGATAGGCGTTAAACAAACACTTGTAGCAGGACTCGTCTCCTCTTGACACTCCTCTGATGACGATAGAGCAGTTCTGCAGACCCTCGTCTTCAAACTCCACGTTCCTCTGAAAAGGTGGGTTGACTACTGGTCCAAATCGTTTGTTGTAGGTGGCCACATTTTCAGTCGCCCCTGGTGTCACTTTCTGCCAGGTGACTTGAAGCACATCTTTGGGTTTCATGAGCCTGCAGCTGAAGTGAGCATCCTCTCCCAGGGTTGCTATGACAACCTGCTGTGTTCTCACCAACTGAGAGACCCTCAGGAAGGAATAGCAGCAGAAGAGTAAGGTAACGTTTAACACGAGCCATGGCAGCAATGTGTGGCCAGGTGAGGCAAGGTGATGTAAATGGACCTCTGGATAATGTGTGGCAAAGTAGTATTTCATACTAGAAACCGTTTTCAAATGAGGCATTGTGGGAGGCATGGTAACG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU650516 lncRNA upstream 37772 7934047 ~ 7934712 (+) False LOC110495467
TU650518 lncRNA upstream 37772 7934376 ~ 7934712 (+) False LOC110495467
TU650517 lncRNA upstream 37772 7934428 ~ 7934712 (+) True LOC110495467
TU650595 lncRNA upstream 68612 7903634 ~ 7903872 (+) True G570786
TU650522 lncRNA upstream 72298 7899380 ~ 7900186 (+) False LOC110525651
TU650637 lncRNA downstream 1668 7976933 ~ 7987474 (+) True G570821
TU650640 lncRNA downstream 2070 7977335 ~ 7983609 (+) True G570822
TU650643 lncRNA downstream 5493 7980758 ~ 7986344 (+) False G570824
TU650644 lncRNA downstream 5493 7980758 ~ 7986344 (+) True G570824
TU650669 lncRNA downstream 10616 7985881 ~ 7991703 (+) True G570836
XM_036982356.1 mRNA upstream 37768 7900629 ~ 7934716 (+) False LOC110495467
XM_036982355.1 mRNA upstream 37768 7929770 ~ 7934716 (+) False LOC110495467
XM_036982357.1 mRNA upstream 37768 7929770 ~ 7934716 (+) False LOC110495467
XM_036982358.1 mRNA upstream 37768 7929770 ~ 7934716 (+) False LOC110495467
XM_021570743.2 mRNA upstream 37768 7929802 ~ 7934716 (+) False LOC110495467
XM_036982366.1 mRNA downstream 33667 8008932 ~ 8017366 (+) False LOC110504762
XM_036982367.1 mRNA downstream 33827 8009092 ~ 8017160 (+) False LOC110504762
XM_036982368.1 mRNA downstream 43168 8018433 ~ 8060835 (+) False LOC110497026
XM_036982369.1 mRNA downstream 43168 8018433 ~ 8060835 (+) False LOC110497026
XM_036982402.1 mRNA downstream 278461 8253726 ~ 8301029 (+) False LOC110528741
TU650514 other upstream 41112 7929788 ~ 7931372 (+) False LOC110495467
TU650510 other upstream 41112 7929853 ~ 7931372 (+) False LOC110495467
TU650554 other upstream 146144 7823113 ~ 7826340 (+) True LOC118965232
TU650360 other upstream 484886 7487205 ~ 7487598 (+) True G570616
TU650345 other upstream 531736 7438559 ~ 7440748 (+) True G570601
TU650663 other downstream 38601 8013866 ~ 8015576 (+) False LOC110504762
TU650647 other downstream 60407 8035672 ~ 8053731 (+) True LOC110497026
TU650651 other downstream 87842 8063107 ~ 8071558 (+) False G570827
TU650653 other downstream 87842 8063107 ~ 8071558 (+) False G570827
TU650656 other downstream 87842 8063107 ~ 8071558 (+) False G570827

Expression Profile