RNA id: TCONS_00036591


Basic Information

Item Value
RNA id TCONS_00036591
length 2826
lncRNA type read_through
GC content 0.42
exon number 3
gene id XLOC_017311
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 24389622 ~ 24704953 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGGTTAAAAGGGCGGGGCTTGTAGACGGAAGACAGTGAATGGAGAGTAGAGAGTGTGACACTGTTTtgagttttgtattttaaagtttaaaaacaaatttttgttGAAGTTTCTGGTTTTACAAAGACCTAACATACACATTATCACATCTGTCGATCGAtggacattttttgctgttaAACGTTCAGTGCGAGGGAGTGAAAGTTGTTGGACCTGCCGCGGACGGGAAGATTGACTGGAGAGAGACCGAGACTTTGCTGATCGTGCCTGTTTGCATCGTGAACGGAGGATTCGTGAAGGCGGTTATACAACTCATCTTCGTGAGCGCGGACGAACGTTTGTAGACTTCGCCATTTCATCGGATTTTACAGTAatggtcaacccaggctcattgtgagaacatacccaggtctacatttctaggAACAGCAAAACACGTAACCTAAGTTCCTATAGAAACATGCAGCTTTGAGATTGTGCAATCAAGATATCATGCCTTTCCAGCCCAGACAGCCGGTCTTTGATGACCTTCTTGCTTTTTCGTTTCTCCGACACAAGCTCTTTAAACCCCCTGCTTACCTGCGAGAGCTGAACCCCCGCTCCGTCCTGCATGATAGCGATCGATAGCCGTGCCGGGTGAAGTGCTGGGTCCTTTGGAGCCGCTGAACCCCAGCTTGAAGGGTTAAAGGAGAGAAAGACAGACGTGGAAAGCAAGGGCAGCCCACACTGATGCCGAATCCCCTATGAGGAGAAGAGGGGCCTTGGACGCACTACAAAGACTCGGCATCCAAGGCCATCCTCAGTGTCTCCTGCCTCTCTCTTGAAATGTGTTTGGTGGGAGAAGAGAGAAACATATCAAAACCACACAGTAGACAGATTGAGTGGGAGAGACATAGAACAATGATGCTTTAGAAGGTTTAGAAGATGCTTTTGAAAAGCATCTGTGAAGAACAGAAAGGATGAGAAATGTTTCAGAAGGAGAGTTGAATTAGCATTCTGCCATCTCCAAGAGCTGAGGAAGCTGTCGAGGTTAAGGCGGGTGAAATTAAAAGTGAAGCCTGCGTTCCTGTTTAAAGGTCCTGAAAGGCAAGCTCATGCAGCAAAAGAGTCAAAAACATTGAGCGTTGAAagcttgcttttcttttcttcaaagcttctttttttatcaaactttAAAGCAAAAGTCTGCATGTTGCAGATCTATTTCATGGGTGCAACAGCTGTTTATTGTCCAACacctttgaattgcattatgaaatCCTACTAGACCAACAGTAAAACTACTCAGACCTGTGGGACTCTCGTTGGGATCACCCGTCCCAAAGCAATAAGGCTGCACTCCTAAATTATGGACCTCCAGGGTTTACTCAGTTATTTTTTGGGGTTGTGATGTTGCATTTTGGGGGCACGGGCCTTTGACTTTTTGTGTCACAGGTGGGTGTTTTGGAAAGTCACAGGAAACCTTGTGGCCATAAGCCATGTGTAGTTAGGGTTGAGTTTGTGGAAACGCTGAATCACAAACAAGTGTAAGAGGAAAAAAAGTTCTCCACTGATGGATTCGAAAGGCCATTGTTATTGCACGCTATGCTGCAGATCCCCAGGTAAAACAATGGCTATCATTAAGAAATCACACACTGCTGTAAATAAAACAAGAGGAAAAAAGTGGAGTGGATGAACTCAAAGATGTTTGCTTGCTGCCGGAGTCCATTAGTCTTATAAAAAATGGAGACTTTCATTGTGGGTCAGCGAAGGAGTCTGAAAGACAATGGACGGTTTAGAAATTTACCGTACAGTCCCAGCACGCAAAGCCAGCAAACCTCATTGAACCCAACGCACTGAACGGATGCTCTGGCATGGACAACTGTCATCAGATTAAAGGATGCTGTTTTATAATCACATTGGGTAGATTACAAATTGCACAGATTAAAGTGATTCAGCCCTGCTACTTTAGAGAGAAATGCAATTTAGAAGAAATTTCAATACTTTCTGGACTACTGATCAATTTGTTCCTccaaaaaaatcacatatttaaattcagctcatgaaaaaaaatgttataagacTCCAATCAAATCCAAACAATTTTATTTCACAGCCTTATTTACTATTATGAGTGAGCACACAGATTTATGTAAACAGGCATctgagacctttttttttttaaatgatgtgccTCGATAAGCATtggagaataaaaacaataatggagAGTTCACACAATTTCTtggtaaaaaaaatgatattgttGGATATTCTGTTGATTGCTAATAGCAACACCTATTTAACCAGGTGTAAATACTCCATGGGAGATCCAAACTTGTATTTAAAAAACGCTTAGTCTCTATCTATACTTTTAAGgcatttaataaaacaagtaCTGAGCTGTACTGCTTAATCCCACCATTTCTCAGCTCAGCATTTACTGGCCCAGAATGTTGACTTCATTGATCCACTTTCAAGTCAACTGTGACCTGAGCACTGATGGTAATGGATCTCTGctgttttaattgaataaattggATAATGACAGCTTGCTGGAGTTCAAACTCAGAGAGATCACAAACGTCCTATGGCTTTGTTTAAGCGCtgtataaacatatttttagagTAATGCAAATCAGGCCTGCAGAATGTGATTTGTACTGTGCGCGATCTGTGCAAGATAAATGCTTTGACTTGGAAATTTTTAAACACTGGAAGGATTATGAAAGCATTCCAGGTGGGCCTGTATGATTTGTTCTTTGACGGTAACTAGCTGAACTAAAAGCACAGGAAAATTCCTGCTTTGCTAGGCTCTGGTAGAAAAGGAAAGCAAACAGATGGA

Function

GO:

id name namespace
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036587 lncRNA upstream 5570 24389622 ~ 24412818 (+) False XLOC_017311
TCONS_00034456 lncRNA upstream 44455 24365947 ~ 24373933 (+) True XLOC_017310
TCONS_00034454 lncRNA upstream 279826 24132073 ~ 24138562 (+) False XLOC_017309
TCONS_00034455 lncRNA upstream 280114 24133408 ~ 24138274 (+) True XLOC_017309
TCONS_00036586 lncRNA upstream 505782 23910422 ~ 23912606 (+) True XLOC_017306
TCONS_00034459 lncRNA downstream 49493 24754446 ~ 24754820 (+) True XLOC_017313
TCONS_00036382 lncRNA downstream 386949 25091902 ~ 25092830 (+) False XLOC_017314
TCONS_00036383 lncRNA downstream 387307 25092260 ~ 25095032 (+) False XLOC_017314
TCONS_00036384 lncRNA downstream 387708 25092661 ~ 25093232 (+) True XLOC_017314
TCONS_00036592 lncRNA downstream 491551 25196504 ~ 25197510 (+) True XLOC_017315
TCONS_00034453 mRNA upstream 454005 23960525 ~ 23964383 (+) True XLOC_017308
TCONS_00034452 mRNA upstream 462374 23947004 ~ 23956014 (+) True XLOC_017307
TCONS_00034450 mRNA upstream 557580 23855025 ~ 23860808 (+) False XLOC_017305
TCONS_00034448 mRNA upstream 581421 23742574 ~ 23836967 (+) True XLOC_017303
TCONS_00034446 mRNA upstream 704371 23676649 ~ 23714017 (+) False XLOC_017302
TCONS_00034460 mRNA downstream 520159 25225112 ~ 25231191 (+) False XLOC_017316
TCONS_00034461 mRNA downstream 520249 25225202 ~ 25271878 (+) False XLOC_017316
TCONS_00034462 mRNA downstream 520325 25225278 ~ 25269881 (+) True XLOC_017316
TCONS_00034464 mRNA downstream 635861 25340814 ~ 25343490 (+) True XLOC_017318
TCONS_00034465 mRNA downstream 645482 25350435 ~ 25355985 (+) False XLOC_017319
TCONS_00034449 other upstream 651319 23766953 ~ 23767069 (+) True XLOC_017304
TCONS_00034433 other upstream 1011864 23395794 ~ 23406524 (+) False XLOC_017297
TCONS_00034428 other upstream 1185584 23232690 ~ 23232804 (+) True XLOC_017294
TCONS_00034424 other upstream 1342071 23076201 ~ 23076317 (+) True XLOC_017290
TCONS_00034397 other upstream 3223624 21194649 ~ 21194764 (+) True XLOC_017276
TCONS_00034463 other downstream 532056 25237009 ~ 25237124 (+) True XLOC_017317
TCONS_00034470 other downstream 761617 25466570 ~ 25469149 (+) True XLOC_017320
TCONS_00034473 other downstream 828111 25533064 ~ 25555015 (+) False XLOC_017322
TCONS_00034475 other downstream 853925 25558878 ~ 25561817 (+) True XLOC_017323
TCONS_00034480 other downstream 875953 25580906 ~ 25581456 (+) True XLOC_017327