RNA id: TU650709



Basic Information


Item Value
RNA id TU650709
length 511
lncRNA type intronic
GC content 0.36
exon number 1
gene id G570871
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 8080918 ~ 8081428 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATATAAAAACTGTATAACACAGGTGTTTTTGGAAAACTGGTTCATTTATCCTAAAGTCAATAGCGAATGTGGCTCTGTATATGTTTATTTTGCAGGTTAATGTATTGAAAACCTATTTCAGCAAGTTAACCAAGTTTTTGCTGGTTTAGCTAGCCATGTTAATGACTAGCTAACTAGCACCGTTGGTCACTGCACTACAATGTCACGCTAGCTATTGCCAGCAGGTGACATATTGAGTGAACGTTTATTTTCTTACTACCTTTTAAATGTTTATGGATTAATATCACTTCCCATTGAGGACATGTGCCATTACTGTTGCTCCTATCTAAAAGATATCTTGtgtatttttgttattttctaaACACAACGCATGTATACTATACGATCACTTTGTGGATTGAGTCTGAGAGAGATATTCTGAGAGCAGTGAATGTGTGGCTGTGACATCCTGTCAATGCCTGTCATCACTGTTTTGATATCTTTTACTGCAGATAAAAACCAAGTCACCCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU650708 lncRNA upstream 65 8080370 ~ 8080853 (+) True G570870
TU650707 lncRNA upstream 693 8079783 ~ 8080225 (+) True G570869
TU650652 lncRNA upstream 9360 8063107 ~ 8071558 (+) False G570827
TU650655 lncRNA upstream 9360 8063107 ~ 8071558 (+) False G570827
TU650658 lncRNA upstream 9360 8067580 ~ 8071558 (+) True G570827
TU650710 lncRNA downstream 81 8081509 ~ 8081812 (+) True G570872
TU650711 lncRNA downstream 804 8082232 ~ 8082531 (+) True G570873
TU650712 lncRNA downstream 1815 8083243 ~ 8084054 (+) True G570874
TU650717 lncRNA downstream 5757 8087185 ~ 8087540 (+) True G570877
TU650716 lncRNA downstream 6590 8088018 ~ 8088396 (+) True G570876
XM_036982368.1 mRNA upstream 20083 8018433 ~ 8060835 (+) False LOC110497026
XM_036982369.1 mRNA upstream 20083 8018433 ~ 8060835 (+) False LOC110497026
XM_036982366.1 mRNA upstream 63552 8008932 ~ 8017366 (+) False LOC110504762
XM_036982367.1 mRNA upstream 63758 8009092 ~ 8017160 (+) False LOC110504762
XM_021570743.2 mRNA upstream 146202 7929802 ~ 7934716 (+) False LOC110495467
XM_036982402.1 mRNA downstream 172298 8253726 ~ 8301029 (+) False LOC110528741
XM_036982403.1 mRNA downstream 172298 8253726 ~ 8301029 (+) False LOC110528741
XM_036982404.1 mRNA downstream 185194 8266622 ~ 8301029 (+) True LOC110528741
XM_036982414.1 mRNA downstream 397318 8478746 ~ 8503131 (+) False LOC110527258
XM_036982413.1 mRNA downstream 397321 8478749 ~ 8503131 (+) False LOC110527258
TU650706 other upstream 1578 8077745 ~ 8079340 (+) True G570868
TU650651 other upstream 9360 8063107 ~ 8071558 (+) False G570827
TU650714 other downstream 2843 8084271 ~ 8085753 (+) True G570875
TU650665 other downstream 58854 8140282 ~ 8140762 (+) True G570834
TU652507 other downstream 568552 8649980 ~ 8650898 (+) True G572315
TU652697 other downstream 840907 8922335 ~ 8922794 (+) True G572476
TU652659 other downstream 848681 8930109 ~ 8933878 (+) False G572449

Expression Profile