RNA id: TU650724


Basic Information

Item Value
RNA id TU650724
length 473
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G570884
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 8114902 ~ 8115374 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACTCTGTGCGGTTTCAATTGAGAGAAAAAAACGTAGTGTGAAAGAGCACGTCTCAGTCTACCGGCTTACCTTTTCTTGCGCTCTACTAAGTCTTTTCTGCATGCTGGTGGCCAGTTTCCCAGTGTTGATCCCTTTCCCCGGTTTCCCCTGCTCCTCAGCCATTTTACCGTTCTTTACTGCTCCGAATCCTTAATTAACAGCTATGCGATGTAAACTGGTGTGAGGAAAGAAAGGGACAGAACTTGTCGAACAGGAGGAAGGGTATGTGCGGATGCGAGGGACTCCCCAGGACTCGGTGCTGCGTAAAAGCCCTCGATAACGGTGTGGGTAGCGCGTAATTGTAATCCCGATGACTGTTTCTGAAAGGTGCAACACGTAATCTAATCAACTCAGGTAGTTTAACAACATAGTCCCACGTGTAAAAACTAAGAAAAAAGTAACTTTTTGGCAATTGACGCAGCAAAGATCCGA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU650723 lncRNA upstream 3842 8110844 ~ 8111060 (+) True G570883
TU650722 lncRNA upstream 6230 8108444 ~ 8108672 (+) True G570882
TU650720 lncRNA upstream 21461 8093227 ~ 8093441 (+) True G570880
TU650716 lncRNA upstream 26506 8088018 ~ 8088396 (+) True G570876
TU650717 lncRNA upstream 27362 8087185 ~ 8087540 (+) True G570877
TU650733 lncRNA downstream 17497 8132871 ~ 8133349 (+) True G570890
TU650735 lncRNA downstream 27335 8142709 ~ 8142963 (+) True G570891
TU650736 lncRNA downstream 28237 8143611 ~ 8143955 (+) True G570892
TU650738 lncRNA downstream 34761 8150135 ~ 8150358 (+) True G570894
TU650742 lncRNA downstream 40950 8156324 ~ 8158430 (+) True G570898
XM_036982368.1 mRNA upstream 54067 8018433 ~ 8060835 (+) False LOC110497026
XM_036982369.1 mRNA upstream 54067 8018433 ~ 8060835 (+) False LOC110497026
XM_036982366.1 mRNA upstream 97536 8008932 ~ 8017366 (+) False LOC110504762
XM_036982367.1 mRNA upstream 97742 8009092 ~ 8017160 (+) False LOC110504762
XM_021570743.2 mRNA upstream 180186 7929802 ~ 7934716 (+) False LOC110495467
XM_036982402.1 mRNA downstream 138352 8253726 ~ 8301029 (+) False LOC110528741
XM_036982403.1 mRNA downstream 138352 8253726 ~ 8301029 (+) False LOC110528741
XM_036982404.1 mRNA downstream 151248 8266622 ~ 8301029 (+) True LOC110528741
XM_036982414.1 mRNA downstream 363372 8478746 ~ 8503131 (+) False LOC110527258
XM_036982413.1 mRNA downstream 363375 8478749 ~ 8503131 (+) False LOC110527258
TU650714 other upstream 29149 8084271 ~ 8085753 (+) True G570875
TU650706 other upstream 35562 8077745 ~ 8079340 (+) True G570868
TU650653 other upstream 43344 8063107 ~ 8071558 (+) False G570827
TU650665 other downstream 24908 8140282 ~ 8140762 (+) True G570834
TU652507 other downstream 534606 8649980 ~ 8650898 (+) True G572315
TU652697 other downstream 806961 8922335 ~ 8922794 (+) True G572476
TU652659 other downstream 814735 8930109 ~ 8933878 (+) False G572449
TU652657 other downstream 816619 8931993 ~ 8933878 (+) False G572449

Expression Profile