RNA id: TU650813


Basic Information

Item Value
RNA id TU650813
length 200
lncRNA type intronic
GC content 0.50
exon number 1
gene id G570960
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 8256530 ~ 8256729 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTCACCTTGAAATGTTGTAGACAGCACTAGCTCTATACTAGCCTAGCCTTGACCCAGGACCAACACACCACACATGTACGACACACACTGGTCACTCGGTGCCTTAGCTCTGCCTCCAACTCCATAACACAGTCAGAAGCCTTTGCCTTTAAGACTGTGCTTGGCTTCTCGTGGGAAGCCGCCCCTTTAAGAACTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU650801 lncRNA upstream 12419 8241899 ~ 8244111 (+) True G570949
TU650794 lncRNA upstream 15628 8239334 ~ 8240902 (+) False G570948
TU650817 lncRNA downstream 6286 8263015 ~ 8264108 (+) False G570963
TU650816 lncRNA downstream 6536 8263265 ~ 8263758 (+) True G570963
TU650818 lncRNA downstream 7621 8264350 ~ 8264946 (+) True G570964
TU652176 lncRNA downstream 74158 8330887 ~ 8331205 (+) True G572041
TU652178 lncRNA downstream 76754 8333483 ~ 8333806 (+) True G572043
XM_036982368.1 mRNA upstream 195695 8018433 ~ 8060835 (+) False LOC110497026
XM_036982369.1 mRNA upstream 195695 8018433 ~ 8060835 (+) False LOC110497026
XM_036982366.1 mRNA upstream 239164 8008932 ~ 8017366 (+) False LOC110504762
XM_036982367.1 mRNA upstream 239370 8009092 ~ 8017160 (+) False LOC110504762
XM_021570743.2 mRNA upstream 321814 7929802 ~ 7934716 (+) False LOC110495467
XM_036982404.1 mRNA downstream 9893 8266622 ~ 8301029 (+) True LOC110528741
XM_036982414.1 mRNA downstream 222017 8478746 ~ 8503131 (+) False LOC110527258
XM_036982413.1 mRNA downstream 222020 8478749 ~ 8503131 (+) False LOC110527258
XM_036982415.1 mRNA downstream 222021 8478750 ~ 8503131 (+) False LOC110527258
XM_036982418.1 mRNA downstream 227327 8484056 ~ 8503131 (+) False LOC110527258
TU650665 other upstream 115768 8140282 ~ 8140762 (+) True G570834
TU650714 other upstream 170777 8084271 ~ 8085753 (+) True G570875
TU650706 other upstream 177190 8077745 ~ 8079340 (+) True G570868
TU650656 other upstream 184972 8063107 ~ 8071558 (+) False G570827
TU652507 other downstream 393251 8649980 ~ 8650898 (+) True G572315
TU652697 other downstream 665606 8922335 ~ 8922794 (+) True G572476
TU652659 other downstream 673380 8930109 ~ 8933878 (+) False G572449
TU652657 other downstream 675264 8931993 ~ 8933878 (+) False G572449
TU652658 other downstream 675264 8931993 ~ 8933878 (+) True G572449

Expression Profile