RNA id: TU652176


Basic Information

Item Value
RNA id TU652176
length 259
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G572041
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 8330887 ~ 8331205 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCTAAGAGGCATCAGGGGATATACTTAATAATACAACGCATTTTCAGTTGAGTAattgaaagaagaaaaaaaacttttgagTCCTTCATATTGTAGGTCTGTGATGAATGAGGGTATTTACTAAATGCAGGGCGACATATACATTAGATGGTGATAACTGCTGAGGTACGACTCTAGGGGCTGATGTACGACTCTAGGGCCGAGGTACGACTCTAGGGCCGAGGTACGACTCTAGGGCCGAGGTACGACTCTAGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU650818 lncRNA upstream 65941 8264350 ~ 8264946 (+) True G570964
TU650817 lncRNA upstream 66779 8263015 ~ 8264108 (+) False G570963
TU650816 lncRNA upstream 67129 8263265 ~ 8263758 (+) True G570963
TU650813 lncRNA upstream 74158 8256530 ~ 8256729 (+) True G570960
TU650801 lncRNA upstream 86776 8241899 ~ 8244111 (+) True G570949
TU652178 lncRNA downstream 2278 8333483 ~ 8333806 (+) True G572043
TU652179 lncRNA downstream 7191 8338396 ~ 8339284 (+) True G572044
TU652182 lncRNA downstream 11895 8343100 ~ 8343630 (+) True G572046
TU652183 lncRNA downstream 15001 8346206 ~ 8346749 (+) True G572047
TU652221 lncRNA downstream 52764 8383969 ~ 8384281 (+) True G572077
XM_036982402.1 mRNA upstream 29858 8253726 ~ 8301029 (+) False LOC110528741
XM_036982403.1 mRNA upstream 29858 8253726 ~ 8301029 (+) False LOC110528741
XM_036982404.1 mRNA upstream 29858 8266622 ~ 8301029 (+) True LOC110528741
XM_036982368.1 mRNA upstream 270052 8018433 ~ 8060835 (+) False LOC110497026
XM_036982369.1 mRNA upstream 270052 8018433 ~ 8060835 (+) False LOC110497026
XM_036982414.1 mRNA downstream 147541 8478746 ~ 8503131 (+) False LOC110527258
XM_036982413.1 mRNA downstream 147544 8478749 ~ 8503131 (+) False LOC110527258
XM_036982415.1 mRNA downstream 147545 8478750 ~ 8503131 (+) False LOC110527258
XM_036982418.1 mRNA downstream 152851 8484056 ~ 8503131 (+) False LOC110527258
XM_036982417.1 mRNA downstream 152852 8484057 ~ 8503131 (+) True LOC110527258
TU650665 other upstream 190125 8140282 ~ 8140762 (+) True G570834
TU650714 other upstream 245134 8084271 ~ 8085753 (+) True G570875
TU650706 other upstream 251547 8077745 ~ 8079340 (+) True G570868
TU650656 other upstream 259329 8063107 ~ 8071558 (+) False G570827
TU652507 other downstream 318775 8649980 ~ 8650898 (+) True G572315
TU652697 other downstream 591130 8922335 ~ 8922794 (+) True G572476
TU652659 other downstream 598904 8930109 ~ 8933878 (+) False G572449
TU652657 other downstream 600788 8931993 ~ 8933878 (+) False G572449
TU652658 other downstream 600788 8931993 ~ 8933878 (+) True G572449

Expression Profile