RNA id: TU652182


Basic Information

Item Value
RNA id TU652182
length 507
lncRNA type intronic
GC content 0.41
exon number 2
gene id G572046
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 8343100 ~ 8343630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGGAGAAAcagagtttgagtttgagtttatttttatttttacagggacagtgcacattaatcaacgtttcagtaaaagtgccggttttagccagccggctaattttcaaccgcagtccctgggcaggttattaaaaacaattacaatatagacaatagcaacataggacaagcaagacatagcatacagacagagcaacataggacaagcaagacgtagcatacagacagagcaacataggacaagcaagacgtagcatacagacagagcaacataggacaagcaagacgtagcatacagacagagcaacataaaacaaaaagcagcaagacaaaattcataaaagcaacaaagtgtttccacacctcacaagctacagacaacagacaacatggaaagcggcaacacacagctagggaccatgttcacaaatctgattgacctttagccatgtcttcaagcattttgtgaaagtgtgatatgtggtgcagttatgtgtgtctgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU652179 lncRNA upstream 3816 8338396 ~ 8339284 (+) True G572044
TU652178 lncRNA upstream 9294 8333483 ~ 8333806 (+) True G572043
TU652176 lncRNA upstream 11895 8330887 ~ 8331205 (+) True G572041
TU650818 lncRNA upstream 78154 8264350 ~ 8264946 (+) True G570964
TU650817 lncRNA upstream 78992 8263015 ~ 8264108 (+) False G570963
TU652183 lncRNA downstream 2576 8346206 ~ 8346749 (+) True G572047
TU652221 lncRNA downstream 40339 8383969 ~ 8384281 (+) True G572077
TU652278 lncRNA downstream 112533 8456163 ~ 8456486 (+) True G572124
TU652280 lncRNA downstream 112971 8456601 ~ 8456900 (+) True G572126
TU652291 lncRNA downstream 127793 8471423 ~ 8472507 (+) True G572134
XM_036982402.1 mRNA upstream 42071 8253726 ~ 8301029 (+) False LOC110528741
XM_036982403.1 mRNA upstream 42071 8253726 ~ 8301029 (+) False LOC110528741
XM_036982404.1 mRNA upstream 42071 8266622 ~ 8301029 (+) True LOC110528741
XM_036982368.1 mRNA upstream 282265 8018433 ~ 8060835 (+) False LOC110497026
XM_036982414.1 mRNA downstream 135116 8478746 ~ 8503131 (+) False LOC110527258
XM_036982413.1 mRNA downstream 135119 8478749 ~ 8503131 (+) False LOC110527258
XM_036982415.1 mRNA downstream 135120 8478750 ~ 8503131 (+) False LOC110527258
XM_036982418.1 mRNA downstream 140426 8484056 ~ 8503131 (+) False LOC110527258
XM_036982417.1 mRNA downstream 140427 8484057 ~ 8503131 (+) True LOC110527258
TU650665 other upstream 202338 8140282 ~ 8140762 (+) True G570834
TU650714 other upstream 257347 8084271 ~ 8085753 (+) True G570875
TU650706 other upstream 263760 8077745 ~ 8079340 (+) True G570868
TU650656 other upstream 271542 8063107 ~ 8071558 (+) False G570827
TU652507 other downstream 306350 8649980 ~ 8650898 (+) True G572315
TU652697 other downstream 578705 8922335 ~ 8922794 (+) True G572476
TU652659 other downstream 586479 8930109 ~ 8933878 (+) False G572449
TU652657 other downstream 588363 8931993 ~ 8933878 (+) False G572449
TU652658 other downstream 588363 8931993 ~ 8933878 (+) True G572449

Expression Profile